Hb_039837_010

Information

Type -
Description -
Location Contig39837: 427-909
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07450g
description hypothetical protein
nr
ID XP_011022015.1
description PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID U5GA11
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039837_010 0.0 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
2 Hb_002811_360 0.0560242881 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
3 Hb_003058_130 0.0681837674 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
4 Hb_009111_050 0.0696582968 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
5 Hb_001454_210 0.0701818763 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
6 Hb_028872_140 0.0747097461 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
7 Hb_000321_070 0.0770882613 - - protein with unknown function [Ricinus communis]
8 Hb_000190_140 0.0773842791 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
9 Hb_006921_030 0.0778551356 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
10 Hb_003392_040 0.0798982899 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
11 Hb_001006_170 0.0811047313 - - Endonuclease V, putative [Ricinus communis]
12 Hb_168707_030 0.0811623355 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
13 Hb_005662_030 0.0815063603 - - protein with unknown function [Ricinus communis]
14 Hb_003766_040 0.0816010472 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_033642_010 0.0820039716 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
16 Hb_006692_030 0.0823118074 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
17 Hb_001295_020 0.0825707363 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
18 Hb_004724_200 0.0833050498 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
19 Hb_005883_050 0.0834774304 - - PREDICTED: transportin-3 [Jatropha curcas]
20 Hb_000120_500 0.0838117336 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_039837_010 Hb_039837_010 Hb_002811_360 Hb_002811_360 Hb_039837_010--Hb_002811_360 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_002811_360--Hb_028872_140 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_003392_040 Hb_003392_040 Hb_003058_130--Hb_003392_040 Hb_011689_080 Hb_011689_080 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_015306_020 Hb_015306_020 Hb_009111_050--Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_028872_140 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_001030_120 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_015306_020 Hb_000085_160 Hb_000085_160 Hb_000321_070--Hb_000085_160 Hb_001790_020 Hb_001790_020 Hb_000321_070--Hb_001790_020 Hb_001571_040 Hb_001571_040 Hb_000321_070--Hb_001571_040 Hb_000245_130 Hb_000245_130 Hb_000321_070--Hb_000245_130 Hb_000103_180 Hb_000103_180 Hb_000321_070--Hb_000103_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.5601 18.5678 17.6152 25.9143 42.954 74.5635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.05 45.7821 50.5147 32.5583 13.2542

CAGE analysis