Hb_039894_010

Information

Type -
Description -
Location Contig39894: 12-3268
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004674
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39689: 588-1794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039894_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000115_310 0.1160118748 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
3 Hb_015763_020 0.1527643006 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
4 Hb_000445_300 0.1606210141 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
5 Hb_001009_290 0.166574209 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
6 Hb_004136_040 0.1670275242 - - putative protein kinase [Arabidopsis thaliana]
7 Hb_004920_130 0.1692765715 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_000181_250 0.1704094845 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
9 Hb_002078_420 0.1709293841 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
10 Hb_027405_020 0.1709583096 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
11 Hb_020499_010 0.1709975986 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000029_160 0.1731494264 - - Nitrilase, putative [Ricinus communis]
13 Hb_004096_080 0.1775775836 - - PREDICTED: IST1 homolog [Jatropha curcas]
14 Hb_000504_090 0.1807698337 - - PREDICTED: titin isoform X10 [Jatropha curcas]
15 Hb_002217_150 0.1814591416 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
16 Hb_000984_050 0.1818492968 - - sucrose transporter 5 [Hevea brasiliensis]
17 Hb_001089_020 0.1825227208 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
18 Hb_002659_060 0.1829042645 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
19 Hb_000376_090 0.183325339 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
20 Hb_001278_070 0.1843661418 - - hypothetical protein glysoja_020139 [Glycine soja]

Gene co-expression network

sample Hb_039894_010 Hb_039894_010 Hb_000115_310 Hb_000115_310 Hb_039894_010--Hb_000115_310 Hb_015763_020 Hb_015763_020 Hb_039894_010--Hb_015763_020 Hb_000445_300 Hb_000445_300 Hb_039894_010--Hb_000445_300 Hb_001009_290 Hb_001009_290 Hb_039894_010--Hb_001009_290 Hb_004136_040 Hb_004136_040 Hb_039894_010--Hb_004136_040 Hb_004920_130 Hb_004920_130 Hb_039894_010--Hb_004920_130 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_000227_380 Hb_000227_380 Hb_015763_020--Hb_000227_380 Hb_000264_100 Hb_000264_100 Hb_015763_020--Hb_000264_100 Hb_000120_610 Hb_000120_610 Hb_015763_020--Hb_000120_610 Hb_000002_440 Hb_000002_440 Hb_015763_020--Hb_000002_440 Hb_004899_070 Hb_004899_070 Hb_015763_020--Hb_004899_070 Hb_000594_020 Hb_000594_020 Hb_015763_020--Hb_000594_020 Hb_176368_010 Hb_176368_010 Hb_000445_300--Hb_176368_010 Hb_001529_060 Hb_001529_060 Hb_000445_300--Hb_001529_060 Hb_000504_090 Hb_000504_090 Hb_000445_300--Hb_000504_090 Hb_000445_300--Hb_001009_290 Hb_001522_010 Hb_001522_010 Hb_000445_300--Hb_001522_010 Hb_001009_290--Hb_001522_010 Hb_009558_040 Hb_009558_040 Hb_001009_290--Hb_009558_040 Hb_007885_070 Hb_007885_070 Hb_001009_290--Hb_007885_070 Hb_009178_020 Hb_009178_020 Hb_001009_290--Hb_009178_020 Hb_001009_290--Hb_001529_060 Hb_006829_090 Hb_006829_090 Hb_001009_290--Hb_006829_090 Hb_008568_010 Hb_008568_010 Hb_004136_040--Hb_008568_010 Hb_000976_040 Hb_000976_040 Hb_004136_040--Hb_000976_040 Hb_000003_340 Hb_000003_340 Hb_004136_040--Hb_000003_340 Hb_004136_040--Hb_000120_610 Hb_004136_040--Hb_000264_100 Hb_001504_190 Hb_001504_190 Hb_004136_040--Hb_001504_190 Hb_002659_060 Hb_002659_060 Hb_004920_130--Hb_002659_060 Hb_033883_060 Hb_033883_060 Hb_004920_130--Hb_033883_060 Hb_001157_180 Hb_001157_180 Hb_004920_130--Hb_001157_180 Hb_031042_070 Hb_031042_070 Hb_004920_130--Hb_031042_070 Hb_000813_100 Hb_000813_100 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86323 3.05688 0.325103 0.659592 6.45073 3.69292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29764 1.28363 0.491096 4.86617 1.36682

CAGE analysis