Hb_039946_020

Information

Type -
Description -
Location Contig39946: 14045-18428
Sequence    

Annotation

kegg
ID rcu:RCOM_1050740
description hypothetical protein
nr
ID XP_002514251.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q53HY2
description Ninja-family protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1
trembl
ID B9RKK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1050740 PE=4 SV=1
Gene Ontology
ID GO:0050794
description ninja-family protein mc410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39788: 14139-18377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039946_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012022_030 0.0591650074 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
3 Hb_000629_010 0.065183514 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_004223_090 0.0729390731 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
5 Hb_000062_240 0.0745940486 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
6 Hb_003615_010 0.0751270514 - - 60S ribosomal protein L8, putative [Ricinus communis]
7 Hb_002026_180 0.0755378781 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
8 Hb_000057_200 0.0779913098 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
9 Hb_001489_150 0.0804229658 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
10 Hb_003766_040 0.0805372114 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000808_270 0.0818171635 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
12 Hb_001677_210 0.0827996908 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
13 Hb_061090_010 0.0839794505 - - RAN BINDING protein 1 [Populus trichocarpa]
14 Hb_000030_300 0.084001484 - - Thioredoxin, putative [Ricinus communis]
15 Hb_000571_120 0.0847667111 - - importin beta-1, putative [Ricinus communis]
16 Hb_010417_080 0.0873926099 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
17 Hb_015292_030 0.0876909522 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
18 Hb_007441_120 0.0880107932 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
19 Hb_004837_040 0.0880790865 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
20 Hb_002030_030 0.0893008155 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]

Gene co-expression network

sample Hb_039946_020 Hb_039946_020 Hb_012022_030 Hb_012022_030 Hb_039946_020--Hb_012022_030 Hb_000629_010 Hb_000629_010 Hb_039946_020--Hb_000629_010 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_003777_270 Hb_003777_270 Hb_004223_090--Hb_003777_270 Hb_000923_020 Hb_000923_020 Hb_004223_090--Hb_000923_020 Hb_000099_240 Hb_000099_240 Hb_004223_090--Hb_000099_240 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4957 19.9251 14.2849 13.4804 24.9798 45.4918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5389 30.2005 32.3494 32.4277 8.5027

CAGE analysis