Hb_040506_010

Information

Type -
Description -
Location Contig40506: 665-1753
Sequence    

Annotation

kegg
ID rcu:RCOM_1382640
description protein binding protein, putative
nr
ID XP_002522096.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Y0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1382640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040506_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000186_100 0.1682259567 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
3 Hb_005470_010 0.1896250641 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
4 Hb_007382_040 0.1984186928 - - uncharacterized LOC105644857 [Jatropha curcas]
5 Hb_000733_040 0.1994358905 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
6 Hb_004307_040 0.2032419844 - - -
7 Hb_000895_040 0.2077688462 - - -
8 Hb_022749_030 0.2082812406 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_010402_020 0.2141240079 - - PREDICTED: uncharacterized protein LOC104417027 [Eucalyptus grandis]
10 Hb_000613_020 0.2187131648 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
11 Hb_017111_010 0.2222587313 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
12 Hb_001691_050 0.2230799334 - - -
13 Hb_073212_010 0.2252648518 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
14 Hb_012150_070 0.2256502529 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
15 Hb_007545_210 0.226698504 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
16 Hb_002609_100 0.2269313097 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
17 Hb_007634_020 0.2308208439 - - -
18 Hb_000815_100 0.2327532631 - - -
19 Hb_032264_130 0.2334940768 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
20 Hb_011639_070 0.2339506983 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_040506_010 Hb_040506_010 Hb_000186_100 Hb_000186_100 Hb_040506_010--Hb_000186_100 Hb_005470_010 Hb_005470_010 Hb_040506_010--Hb_005470_010 Hb_007382_040 Hb_007382_040 Hb_040506_010--Hb_007382_040 Hb_000733_040 Hb_000733_040 Hb_040506_010--Hb_000733_040 Hb_004307_040 Hb_004307_040 Hb_040506_010--Hb_004307_040 Hb_000895_040 Hb_000895_040 Hb_040506_010--Hb_000895_040 Hb_017111_010 Hb_017111_010 Hb_000186_100--Hb_017111_010 Hb_002388_060 Hb_002388_060 Hb_000186_100--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_000186_100--Hb_007545_210 Hb_003687_200 Hb_003687_200 Hb_000186_100--Hb_003687_200 Hb_032264_130 Hb_032264_130 Hb_000186_100--Hb_032264_130 Hb_005470_010--Hb_000895_040 Hb_000033_060 Hb_000033_060 Hb_005470_010--Hb_000033_060 Hb_072912_010 Hb_072912_010 Hb_005470_010--Hb_072912_010 Hb_002960_120 Hb_002960_120 Hb_005470_010--Hb_002960_120 Hb_009193_130 Hb_009193_130 Hb_005470_010--Hb_009193_130 Hb_002609_100 Hb_002609_100 Hb_007382_040--Hb_002609_100 Hb_001259_030 Hb_001259_030 Hb_007382_040--Hb_001259_030 Hb_003050_090 Hb_003050_090 Hb_007382_040--Hb_003050_090 Hb_000613_020 Hb_000613_020 Hb_007382_040--Hb_000613_020 Hb_060437_010 Hb_060437_010 Hb_007382_040--Hb_060437_010 Hb_004254_040 Hb_004254_040 Hb_007382_040--Hb_004254_040 Hb_129067_010 Hb_129067_010 Hb_000733_040--Hb_129067_010 Hb_088542_010 Hb_088542_010 Hb_000733_040--Hb_088542_010 Hb_089140_060 Hb_089140_060 Hb_000733_040--Hb_089140_060 Hb_073212_010 Hb_073212_010 Hb_000733_040--Hb_073212_010 Hb_001691_050 Hb_001691_050 Hb_000733_040--Hb_001691_050 Hb_010290_020 Hb_010290_020 Hb_004307_040--Hb_010290_020 Hb_000580_060 Hb_000580_060 Hb_004307_040--Hb_000580_060 Hb_005568_070 Hb_005568_070 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_003540_140 Hb_003540_140 Hb_004307_040--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_004307_040--Hb_000329_540 Hb_010402_020 Hb_010402_020 Hb_000895_040--Hb_010402_020 Hb_000523_020 Hb_000523_020 Hb_000895_040--Hb_000523_020 Hb_000270_400 Hb_000270_400 Hb_000895_040--Hb_000270_400 Hb_001195_110 Hb_001195_110 Hb_000895_040--Hb_001195_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17988 0.0867845 0.041508 0 0.344934 0.476654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118612 0 0.160233 0.0384928 0

CAGE analysis