Hb_040575_010

Information

Type -
Description -
Location Contig40575: 946-1883
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26760g
description POPTRDRAFT_561868; hypothetical protein
nr
ID XP_012076624.1
description PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HA28
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040575_010 0.0 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
2 Hb_009178_030 0.0800896 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000000_250 0.0863077831 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
4 Hb_000953_020 0.0885659963 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_000086_400 0.0886689039 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_001898_220 0.0906071876 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
7 Hb_001635_060 0.0927467306 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
8 Hb_001892_020 0.0932787205 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_092337_010 0.0966217485 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
10 Hb_004738_100 0.0979921591 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
11 Hb_000207_250 0.0984398974 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
12 Hb_000125_100 0.0989671838 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
13 Hb_000058_060 0.0991607564 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
14 Hb_007532_030 0.099859557 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
15 Hb_004907_110 0.1008045032 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_003996_020 0.1010233219 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002026_180 0.1013815589 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_006922_110 0.1015042033 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_003092_030 0.1016821464 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
20 Hb_007416_280 0.1028653769 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_040575_010 Hb_040575_010 Hb_009178_030 Hb_009178_030 Hb_040575_010--Hb_009178_030 Hb_000000_250 Hb_000000_250 Hb_040575_010--Hb_000000_250 Hb_000953_020 Hb_000953_020 Hb_040575_010--Hb_000953_020 Hb_000086_400 Hb_000086_400 Hb_040575_010--Hb_000086_400 Hb_001898_220 Hb_001898_220 Hb_040575_010--Hb_001898_220 Hb_001635_060 Hb_001635_060 Hb_040575_010--Hb_001635_060 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_007416_280 Hb_007416_280 Hb_000953_020--Hb_007416_280 Hb_000510_130 Hb_000510_130 Hb_000953_020--Hb_000510_130 Hb_002026_180 Hb_002026_180 Hb_000953_020--Hb_002026_180 Hb_000571_120 Hb_000571_120 Hb_000953_020--Hb_000571_120 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_020956_020 Hb_020956_020 Hb_000953_020--Hb_020956_020 Hb_000086_400--Hb_085863_030 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_000086_400--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070 Hb_001898_220--Hb_001635_060 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_001898_220--Hb_189003_080 Hb_001898_220--Hb_002026_180 Hb_000041_050 Hb_000041_050 Hb_001898_220--Hb_000041_050 Hb_011485_070 Hb_011485_070 Hb_001635_060--Hb_011485_070 Hb_000185_040 Hb_000185_040 Hb_001635_060--Hb_000185_040 Hb_000656_110 Hb_000656_110 Hb_001635_060--Hb_000656_110 Hb_004218_110 Hb_004218_110 Hb_001635_060--Hb_004218_110 Hb_007441_230 Hb_007441_230 Hb_001635_060--Hb_007441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.768424 0.967052 0.5585 0.993195 0.733731 1.67996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21704 1.49506 2.03742 0.825732 0.356723

CAGE analysis