Hb_040600_010

Information

Type -
Description -
Location Contig40600: 4882-6949
Sequence    

Annotation

kegg
ID cit:102613160
description protein TRANSPARENT TESTA 12-like
nr
ID CAN59744.1
description hypothetical protein VITISV_036432 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BUX5
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040600_010 0.0 - - hypothetical protein VITISV_036432 [Vitis vinifera]
2 Hb_000878_100 0.1837834967 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
3 Hb_000768_010 0.2212525602 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
4 Hb_008147_050 0.2521328363 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
5 Hb_011164_010 0.2541875653 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
6 Hb_120662_010 0.2542168018 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
7 Hb_000016_030 0.256260053 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
8 Hb_000206_120 0.2607515527 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_000996_180 0.2615019898 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
10 Hb_001882_110 0.2623383634 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_003177_010 0.2628346542 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
12 Hb_001493_010 0.2635252053 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
13 Hb_002742_080 0.2646136905 - - unknown [Populus trichocarpa]
14 Hb_003492_010 0.2668058272 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
15 Hb_000330_160 0.2688463608 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
16 Hb_001901_080 0.271480709 - - PREDICTED: xylose isomerase [Jatropha curcas]
17 Hb_009693_030 0.2729753883 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_009119_030 0.2734508388 - - GMFP4 [Medicago truncatula]
19 Hb_030627_040 0.2737863093 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
20 Hb_080147_080 0.2741845491 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_040600_010 Hb_040600_010 Hb_000878_100 Hb_000878_100 Hb_040600_010--Hb_000878_100 Hb_000768_010 Hb_000768_010 Hb_040600_010--Hb_000768_010 Hb_008147_050 Hb_008147_050 Hb_040600_010--Hb_008147_050 Hb_011164_010 Hb_011164_010 Hb_040600_010--Hb_011164_010 Hb_120662_010 Hb_120662_010 Hb_040600_010--Hb_120662_010 Hb_000016_030 Hb_000016_030 Hb_040600_010--Hb_000016_030 Hb_080147_080 Hb_080147_080 Hb_000878_100--Hb_080147_080 Hb_000878_100--Hb_000768_010 Hb_006420_020 Hb_006420_020 Hb_000878_100--Hb_006420_020 Hb_011465_030 Hb_011465_030 Hb_000878_100--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_000878_100--Hb_000265_250 Hb_002626_040 Hb_002626_040 Hb_000768_010--Hb_002626_040 Hb_000768_010--Hb_006420_020 Hb_156144_010 Hb_156144_010 Hb_000768_010--Hb_156144_010 Hb_000540_120 Hb_000540_120 Hb_000768_010--Hb_000540_120 Hb_010831_020 Hb_010831_020 Hb_000768_010--Hb_010831_020 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_004884_030 Hb_004884_030 Hb_008147_050--Hb_004884_030 Hb_006745_010 Hb_006745_010 Hb_011164_010--Hb_006745_010 Hb_011164_010--Hb_000062_030 Hb_002039_050 Hb_002039_050 Hb_011164_010--Hb_002039_050 Hb_011164_010--Hb_000505_110 Hb_011164_010--Hb_027380_230 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_000329_420 Hb_000329_420 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_004324_240 Hb_004324_240 Hb_000016_030--Hb_004324_240 Hb_000270_160 Hb_000270_160 Hb_000016_030--Hb_000270_160 Hb_000302_160 Hb_000302_160 Hb_000016_030--Hb_000302_160 Hb_000198_070 Hb_000198_070 Hb_000016_030--Hb_000198_070 Hb_004374_080 Hb_004374_080 Hb_000016_030--Hb_004374_080 Hb_000365_160 Hb_000365_160 Hb_000016_030--Hb_000365_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.52618 0.699135 0.157529 0.589017 0.951368 0.702866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389054 0 0 0 0.242798

CAGE analysis