Hb_040747_010

Information

Type -
Description -
Location Contig40747: 526-975
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15120g
description POPTRDRAFT_767147; hypothetical protein
nr
ID XP_002313649.2
description hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HQT3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40349: 896-1009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040747_010 0.0 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
2 Hb_106688_010 0.1403069323 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
3 Hb_013358_100 0.1482764103 - - unknown [Medicago truncatula]
4 Hb_000179_180 0.1589498314 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
5 Hb_000116_150 0.1601930508 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_077573_010 0.1615063386 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_145317_010 0.1675085387 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
8 Hb_009247_010 0.1681939332 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
9 Hb_002250_050 0.1695939117 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
10 Hb_154538_010 0.1727497076 - - -
11 Hb_091675_010 0.1763072324 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
12 Hb_133724_010 0.1772974589 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000479_290 0.1785397448 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
14 Hb_011932_010 0.1800215223 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
15 Hb_005686_120 0.1839299556 - - -
16 Hb_181441_010 0.1841358142 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
17 Hb_009393_200 0.1845600406 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
18 Hb_004935_080 0.186660369 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
19 Hb_177152_010 0.1871935662 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
20 Hb_003992_040 0.187741747 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]

Gene co-expression network

sample Hb_040747_010 Hb_040747_010 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_165402_010 Hb_165402_010 Hb_106688_010--Hb_165402_010 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_106688_010--Hb_077573_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_009393_200 Hb_009393_200 Hb_000179_180--Hb_009393_200 Hb_001484_100 Hb_001484_100 Hb_000179_180--Hb_001484_100 Hb_000116_150--Hb_009247_010 Hb_146081_010 Hb_146081_010 Hb_000116_150--Hb_146081_010 Hb_000890_030 Hb_000890_030 Hb_000116_150--Hb_000890_030 Hb_000390_250 Hb_000390_250 Hb_000116_150--Hb_000390_250 Hb_091675_010 Hb_091675_010 Hb_000116_150--Hb_091675_010 Hb_000098_050 Hb_000098_050 Hb_000116_150--Hb_000098_050 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_077573_010--Hb_165402_010 Hb_099878_050 Hb_099878_050 Hb_077573_010--Hb_099878_050 Hb_181441_010 Hb_181441_010 Hb_077573_010--Hb_181441_010 Hb_077573_010--Hb_009247_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_145317_010--Hb_009247_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_145317_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.49067 19.7201 13.9792 28.2102 3.29013 22.5646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0129 4.28679 2.9197 4.454 2.06704

CAGE analysis