Hb_040819_010

Information

Type -
Description -
Location Contig40819: 1-660
Sequence    

Annotation

kegg
ID rcu:RCOM_0920170
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002515383.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q8RXV3
description Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1
trembl
ID B9RNR4
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0920170 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 59

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040819_010 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_000926_200 0.0697516042 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
3 Hb_004984_030 0.0842332223 - - protein with unknown function [Ricinus communis]
4 Hb_002028_090 0.0878193641 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
5 Hb_000035_160 0.0961603164 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
6 Hb_032202_100 0.0971255835 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000116_490 0.1007942971 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
8 Hb_005883_080 0.1037534546 - - type 2A protein phosphatase-2 [Populus trichocarpa]
9 Hb_005245_120 0.1042273598 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_015057_020 0.1046875521 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
11 Hb_000723_230 0.1050395363 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
12 Hb_006637_030 0.1052102166 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
13 Hb_000946_090 0.1064446409 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
14 Hb_001804_080 0.1067522915 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_002303_020 0.1079723016 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
16 Hb_002534_100 0.1080995017 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
17 Hb_001728_040 0.1093979868 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
18 Hb_044653_040 0.1095974245 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
19 Hb_000189_570 0.1100204091 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
20 Hb_001178_010 0.1106534214 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]

Gene co-expression network

sample Hb_040819_010 Hb_040819_010 Hb_000926_200 Hb_000926_200 Hb_040819_010--Hb_000926_200 Hb_004984_030 Hb_004984_030 Hb_040819_010--Hb_004984_030 Hb_002028_090 Hb_002028_090 Hb_040819_010--Hb_002028_090 Hb_000035_160 Hb_000035_160 Hb_040819_010--Hb_000035_160 Hb_032202_100 Hb_032202_100 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_000926_200--Hb_000035_160 Hb_000926_200--Hb_032202_100 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_004984_030--Hb_002028_090 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_001188_030 Hb_001188_030 Hb_002028_090--Hb_001188_030 Hb_044653_040 Hb_044653_040 Hb_002028_090--Hb_044653_040 Hb_002028_090--Hb_000926_200 Hb_002968_040 Hb_002968_040 Hb_002028_090--Hb_002968_040 Hb_000035_160--Hb_032202_100 Hb_003207_180 Hb_003207_180 Hb_000035_160--Hb_003207_180 Hb_157023_020 Hb_157023_020 Hb_000035_160--Hb_157023_020 Hb_000035_160--Hb_000116_490 Hb_000603_160 Hb_000603_160 Hb_000035_160--Hb_000603_160 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_005288_130 Hb_005288_130 Hb_000116_490--Hb_005288_130 Hb_000116_490--Hb_032202_100 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.66812 20.3176 37.7252 38.6139 11.4151 7.58171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9094 42.6492 15.6657 18.44 24.2247

CAGE analysis