Hb_040991_010

Information

Type -
Description -
Location Contig40991: 68-478
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005488
description choline chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040991_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_001935_210 0.1896244022 - - -
3 Hb_059924_010 0.2888881639 - - -
4 Hb_000525_060 0.3048269422 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
5 Hb_001773_020 0.3341957395 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
6 Hb_008507_050 0.3444311426 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
7 Hb_010603_030 0.3495725457 - - -
8 Hb_006045_060 0.3535725616 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
9 Hb_000721_020 0.3579743016 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_168978_040 0.3618670561 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
11 Hb_045370_010 0.3633994766 - - conserved hypothetical protein [Ricinus communis]
12 Hb_116195_010 0.3634811117 - - -
13 Hb_000832_330 0.3644363996 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
14 Hb_085375_010 0.3689070143 - - protein with unknown function [Ricinus communis]
15 Hb_004324_020 0.3703056133 - - -
16 Hb_000326_020 0.3739089226 - - -
17 Hb_074152_010 0.3742804423 - - -
18 Hb_149731_010 0.3747746437 - - -
19 Hb_000917_250 0.3750005334 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
20 Hb_000088_030 0.3751083399 - - hypothetical protein JCGZ_10947 [Jatropha curcas]

Gene co-expression network

sample Hb_040991_010 Hb_040991_010 Hb_001935_210 Hb_001935_210 Hb_040991_010--Hb_001935_210 Hb_059924_010 Hb_059924_010 Hb_040991_010--Hb_059924_010 Hb_000525_060 Hb_000525_060 Hb_040991_010--Hb_000525_060 Hb_001773_020 Hb_001773_020 Hb_040991_010--Hb_001773_020 Hb_008507_050 Hb_008507_050 Hb_040991_010--Hb_008507_050 Hb_010603_030 Hb_010603_030 Hb_040991_010--Hb_010603_030 Hb_000832_330 Hb_000832_330 Hb_001935_210--Hb_000832_330 Hb_001414_130 Hb_001414_130 Hb_001935_210--Hb_001414_130 Hb_001935_210--Hb_059924_010 Hb_001811_010 Hb_001811_010 Hb_001935_210--Hb_001811_010 Hb_004330_030 Hb_004330_030 Hb_001935_210--Hb_004330_030 Hb_103452_020 Hb_103452_020 Hb_059924_010--Hb_103452_020 Hb_006045_060 Hb_006045_060 Hb_059924_010--Hb_006045_060 Hb_000721_020 Hb_000721_020 Hb_059924_010--Hb_000721_020 Hb_007547_050 Hb_007547_050 Hb_059924_010--Hb_007547_050 Hb_001493_110 Hb_001493_110 Hb_000525_060--Hb_001493_110 Hb_000088_030 Hb_000088_030 Hb_000525_060--Hb_000088_030 Hb_000608_040 Hb_000608_040 Hb_000525_060--Hb_000608_040 Hb_004324_020 Hb_004324_020 Hb_000525_060--Hb_004324_020 Hb_003125_140 Hb_003125_140 Hb_000525_060--Hb_003125_140 Hb_005535_060 Hb_005535_060 Hb_000525_060--Hb_005535_060 Hb_000917_250 Hb_000917_250 Hb_001773_020--Hb_000917_250 Hb_001769_020 Hb_001769_020 Hb_001773_020--Hb_001769_020 Hb_080083_010 Hb_080083_010 Hb_001773_020--Hb_080083_010 Hb_002701_130 Hb_002701_130 Hb_001773_020--Hb_002701_130 Hb_011515_030 Hb_011515_030 Hb_001773_020--Hb_011515_030 Hb_074152_010 Hb_074152_010 Hb_001773_020--Hb_074152_010 Hb_116195_010 Hb_116195_010 Hb_008507_050--Hb_116195_010 Hb_002759_180 Hb_002759_180 Hb_008507_050--Hb_002759_180 Hb_008507_050--Hb_001493_110 Hb_008507_050--Hb_004324_020 Hb_142392_010 Hb_142392_010 Hb_008507_050--Hb_142392_010 Hb_005529_010 Hb_005529_010 Hb_008507_050--Hb_005529_010 Hb_134732_010 Hb_134732_010 Hb_010603_030--Hb_134732_010 Hb_005116_020 Hb_005116_020 Hb_010603_030--Hb_005116_020 Hb_001951_120 Hb_001951_120 Hb_010603_030--Hb_001951_120 Hb_031073_010 Hb_031073_010 Hb_010603_030--Hb_031073_010 Hb_002983_100 Hb_002983_100 Hb_010603_030--Hb_002983_100 Hb_010603_030--Hb_000088_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239906 0.139827 0.125295 0 1.0188 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.297321 0 0.0633793 0

CAGE analysis