Hb_040996_010

Information

Type -
Description -
Location Contig40996: 1426-5451
Sequence    

Annotation

kegg
ID tcc:TCM_025101
description P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative
nr
ID XP_012074116.1
description PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
swissprot
ID Q00416
description Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2
trembl
ID A0A067KTV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10467 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40467: 1478-1685 , PASA_asmbl_40468: 1927-2644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040996_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
2 Hb_176022_020 0.0945134838 - - cytochrome P450, putative [Ricinus communis]
3 Hb_012055_020 0.1079313602 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
4 Hb_000057_060 0.1093384361 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
5 Hb_019613_020 0.1119895056 - - phospholipase C, putative [Ricinus communis]
6 Hb_000599_120 0.1144271076 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
7 Hb_000005_050 0.1190484531 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
8 Hb_000984_180 0.1201700169 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
9 Hb_000538_210 0.1221165871 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002391_110 0.1223728293 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
11 Hb_001476_100 0.1248291765 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000696_110 0.1267307363 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
13 Hb_035524_030 0.1276967446 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001102_110 0.1289623216 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
15 Hb_005488_100 0.1309846847 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
16 Hb_002067_160 0.134388769 - - Protein MLO, putative [Ricinus communis]
17 Hb_127979_010 0.1345093444 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
18 Hb_002506_010 0.1348040978 - - choline transporter-related family protein [Populus trichocarpa]
19 Hb_162275_010 0.1354962961 - - -
20 Hb_003404_030 0.1389872671 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_040996_010 Hb_040996_010 Hb_176022_020 Hb_176022_020 Hb_040996_010--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_040996_010--Hb_012055_020 Hb_000057_060 Hb_000057_060 Hb_040996_010--Hb_000057_060 Hb_019613_020 Hb_019613_020 Hb_040996_010--Hb_019613_020 Hb_000599_120 Hb_000599_120 Hb_040996_010--Hb_000599_120 Hb_000005_050 Hb_000005_050 Hb_040996_010--Hb_000005_050 Hb_003404_030 Hb_003404_030 Hb_176022_020--Hb_003404_030 Hb_176022_020--Hb_019613_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_176022_020--Hb_000005_050 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_000230_110 Hb_000230_110 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_035524_030 Hb_035524_030 Hb_019613_020--Hb_035524_030 Hb_019613_020--Hb_127979_010 Hb_000085_280 Hb_000085_280 Hb_019613_020--Hb_000085_280 Hb_019613_020--Hb_003404_030 Hb_019613_020--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_000599_120--Hb_002391_110 Hb_000599_120--Hb_000057_060 Hb_000599_120--Hb_000984_180 Hb_000365_360 Hb_000365_360 Hb_000599_120--Hb_000365_360 Hb_000696_110 Hb_000696_110 Hb_000599_120--Hb_000696_110 Hb_000599_120--Hb_127979_010 Hb_011021_030 Hb_011021_030 Hb_000005_050--Hb_011021_030 Hb_000005_050--Hb_019613_020 Hb_000005_050--Hb_000984_180 Hb_000005_050--Hb_003404_030 Hb_011316_030 Hb_011316_030 Hb_000005_050--Hb_011316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.2565 1.52064 1.27984 2.47666 37.6126 50.0662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1612 12.4826 39.6575 8.23935 8.87188

CAGE analysis