Hb_041025_010

Information

Type -
Description -
Location Contig41025: 1356-1781
Sequence    

Annotation

kegg
ID rcu:RCOM_0461880
description [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative (EC:2.1.1.127)
nr
ID XP_012074063.1
description PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08672 PE=4 SV=1
Gene Ontology
ID GO:0030785
description set domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40552: 943-1422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041025_010 0.0 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
2 Hb_000082_020 0.0892649558 - - -
3 Hb_046120_010 0.1598711482 - - -
4 Hb_114079_010 0.1616681334 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
5 Hb_183522_010 0.1713311376 - - Far upstream element-binding protein, putative [Ricinus communis]
6 Hb_010964_020 0.1736529212 - - RNA helicase [Arabidopsis thaliana]
7 Hb_169505_010 0.1794494126 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
8 Hb_001623_290 0.1879904757 - - unknown [Populus trichocarpa]
9 Hb_025905_020 0.1890003786 - - major allergen Pru ar 1-like [Jatropha curcas]
10 Hb_106415_010 0.1904408399 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
11 Hb_007083_020 0.1927739167 - - hypothetical protein F775_15403 [Aegilops tauschii]
12 Hb_001623_300 0.1939561553 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
13 Hb_094437_040 0.1945154094 - - ankyrin repeat family protein, partial [Manihot esculenta]
14 Hb_178620_010 0.1949839383 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
15 Hb_035436_010 0.1977518948 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
16 Hb_001252_200 0.2009048781 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
17 Hb_051424_010 0.2051865729 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
18 Hb_033385_010 0.2075493551 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
19 Hb_000429_250 0.2098262965 - - hypothetical protein L484_000744 [Morus notabilis]
20 Hb_068014_010 0.2118887461 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_041025_010 Hb_041025_010 Hb_000082_020 Hb_000082_020 Hb_041025_010--Hb_000082_020 Hb_046120_010 Hb_046120_010 Hb_041025_010--Hb_046120_010 Hb_114079_010 Hb_114079_010 Hb_041025_010--Hb_114079_010 Hb_183522_010 Hb_183522_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010 Hb_000082_020--Hb_114079_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_046120_010--Hb_114079_010 Hb_001252_200 Hb_001252_200 Hb_046120_010--Hb_001252_200 Hb_000084_130 Hb_000084_130 Hb_046120_010--Hb_000084_130 Hb_032258_020 Hb_032258_020 Hb_046120_010--Hb_032258_020 Hb_114079_010--Hb_183522_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_114079_010--Hb_010964_020 Hb_183522_010--Hb_007083_020 Hb_183522_010--Hb_106415_010 Hb_183522_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_183522_010--Hb_000053_030 Hb_005107_020 Hb_005107_020 Hb_183522_010--Hb_005107_020 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_010964_020--Hb_025905_020 Hb_035436_010 Hb_035436_010 Hb_169505_010--Hb_035436_010 Hb_169505_010--Hb_178620_010 Hb_040747_010 Hb_040747_010 Hb_169505_010--Hb_040747_010 Hb_001518_070 Hb_001518_070 Hb_169505_010--Hb_001518_070 Hb_133724_010 Hb_133724_010 Hb_169505_010--Hb_133724_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4445 13.5655 47.4192 114.856 15.2246 187.733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0266 11.6432 3.03713 16.3543 9.51667

CAGE analysis