Hb_041184_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig41184: 7507-11204
Sequence    

Annotation

kegg
ID rcu:RCOM_0895260
description Disease resistance protein RPS5, putative (EC:3.1.3.16)
nr
ID XP_002517530.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID B9RUW1
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0895260 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40794: 9753-9913 , PASA_asmbl_40795: 10040-10460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041184_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_188487_010 0.2214230277 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
3 Hb_002849_150 0.2323133758 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
4 Hb_008749_090 0.2337151389 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
5 Hb_003517_010 0.2424348584 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
6 Hb_002774_010 0.2459611302 - - -
7 Hb_006916_190 0.2483420861 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_012753_190 0.2508608498 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
9 Hb_000380_130 0.2510178886 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
10 Hb_011671_420 0.2517567799 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
11 Hb_001900_130 0.2539801542 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
12 Hb_033843_020 0.2547253202 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
13 Hb_035726_010 0.2556702685 - - Insulin-degrading enzyme, putative [Ricinus communis]
14 Hb_000160_100 0.258111466 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
15 Hb_001524_020 0.2584350705 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
16 Hb_107201_010 0.2602869477 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_074892_010 0.262298305 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_001172_030 0.2638772225 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
19 Hb_022815_020 0.2653713281 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
20 Hb_004310_170 0.2656138811 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]

Gene co-expression network

sample Hb_041184_010 Hb_041184_010 Hb_188487_010 Hb_188487_010 Hb_041184_010--Hb_188487_010 Hb_002849_150 Hb_002849_150 Hb_041184_010--Hb_002849_150 Hb_008749_090 Hb_008749_090 Hb_041184_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_041184_010--Hb_003517_010 Hb_002774_010 Hb_002774_010 Hb_041184_010--Hb_002774_010 Hb_006916_190 Hb_006916_190 Hb_041184_010--Hb_006916_190 Hb_001780_010 Hb_001780_010 Hb_188487_010--Hb_001780_010 Hb_188487_010--Hb_002774_010 Hb_001524_020 Hb_001524_020 Hb_188487_010--Hb_001524_020 Hb_155556_010 Hb_155556_010 Hb_188487_010--Hb_155556_010 Hb_000920_070 Hb_000920_070 Hb_188487_010--Hb_000920_070 Hb_001004_100 Hb_001004_100 Hb_002849_150--Hb_001004_100 Hb_107201_010 Hb_107201_010 Hb_002849_150--Hb_107201_010 Hb_000135_050 Hb_000135_050 Hb_002849_150--Hb_000135_050 Hb_000922_010 Hb_000922_010 Hb_002849_150--Hb_000922_010 Hb_012753_190 Hb_012753_190 Hb_002849_150--Hb_012753_190 Hb_029510_110 Hb_029510_110 Hb_002849_150--Hb_029510_110 Hb_008749_090--Hb_003517_010 Hb_149515_010 Hb_149515_010 Hb_008749_090--Hb_149515_010 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_000816_020 Hb_000816_020 Hb_008749_090--Hb_000816_020 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_002774_010--Hb_001524_020 Hb_002774_010--Hb_001780_010 Hb_002774_010--Hb_000920_070 Hb_002774_010--Hb_155556_010 Hb_159957_020 Hb_159957_020 Hb_002774_010--Hb_159957_020 Hb_172939_010 Hb_172939_010 Hb_006916_190--Hb_172939_010 Hb_000216_030 Hb_000216_030 Hb_006916_190--Hb_000216_030 Hb_006916_190--Hb_000816_020 Hb_012788_010 Hb_012788_010 Hb_006916_190--Hb_012788_010 Hb_168386_010 Hb_168386_010 Hb_006916_190--Hb_168386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0660749 0.442051 0.542728 0.468203 0.395519 0.0332773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.43635 10.1635 3.27306

CAGE analysis