Hb_041205_010

Information

Type -
Description -
Location Contig41205: 1-673
Sequence    

Annotation

kegg
ID rcu:RCOM_0993070
description hypothetical protein
nr
ID XP_002521014.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0V7S6
description F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1
trembl
ID B9S4V7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041205_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_098852_010 0.099781318 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_002259_160 0.1020080901 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
4 Hb_000215_200 0.107919984 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
5 Hb_082006_010 0.1084736757 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002078_260 0.1160746384 - - unknown [Populus trichocarpa]
7 Hb_000641_020 0.1194730901 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
8 Hb_000326_090 0.1195823701 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
9 Hb_000635_070 0.1241364953 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
10 Hb_029142_070 0.1252695083 - - -
11 Hb_003352_040 0.1253893063 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
12 Hb_005694_020 0.1266648087 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
13 Hb_030982_020 0.1284616302 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
14 Hb_001504_080 0.1287148052 - - golgi snare 11 protein, putative [Ricinus communis]
15 Hb_012675_070 0.1287949634 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
16 Hb_000710_070 0.1290705092 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
17 Hb_132180_010 0.1301608751 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
18 Hb_007894_230 0.1368211703 - - 30S ribosomal protein S14, putative [Ricinus communis]
19 Hb_028420_020 0.1392449183 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
20 Hb_012653_040 0.1417344563 - - UV-induced protein uvi31, putative [Ricinus communis]

Gene co-expression network

sample Hb_041205_010 Hb_041205_010 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_002078_260 Hb_002078_260 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020 Hb_030982_020 Hb_030982_020 Hb_098852_010--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_098852_010--Hb_132180_010 Hb_098852_010--Hb_002078_260 Hb_003861_040 Hb_003861_040 Hb_098852_010--Hb_003861_040 Hb_000326_090 Hb_000326_090 Hb_098852_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_002259_160--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_002259_160--Hb_037887_010 Hb_003352_040 Hb_003352_040 Hb_002259_160--Hb_003352_040 Hb_012675_070 Hb_012675_070 Hb_002259_160--Hb_012675_070 Hb_002259_160--Hb_000326_090 Hb_002284_050 Hb_002284_050 Hb_000215_200--Hb_002284_050 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_000215_200--Hb_000641_020 Hb_003994_270 Hb_003994_270 Hb_000215_200--Hb_003994_270 Hb_000215_200--Hb_132180_010 Hb_000635_070 Hb_000635_070 Hb_082006_010--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_009270_030 Hb_009270_030 Hb_082006_010--Hb_009270_030 Hb_082006_010--Hb_002078_260 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_000641_020--Hb_003994_270 Hb_000641_020--Hb_000635_070 Hb_029142_070 Hb_029142_070 Hb_000641_020--Hb_029142_070 Hb_000710_070 Hb_000710_070 Hb_000641_020--Hb_000710_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68314 9.10415 5.18741 56.5166 10.2523 66.5547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3676 43.9292 28.0442 22.3625 13.4389

CAGE analysis