Hb_041290_010

Information

Type -
Description -
Location Contig41290: 16410-26007
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15820g
description POPTRDRAFT_246818; thioredoxin family protein
nr
ID XP_002320494.2
description thioredoxin family protein [Populus trichocarpa]
swissprot
ID Q67UF5
description Protein disulfide isomerase-like 2-3 OS=Oryza sativa subsp. japonica GN=PDIL2-3 PE=2 SV=1
trembl
ID B9IAL5
description Thioredoxin family protein OS=Populus trichocarpa GN=POPTR_0014s15820g PE=3 SV=2
Gene Ontology
ID GO:0045454
description protein disulfide isomerase-like 2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40904: 17599-23519 , PASA_asmbl_40906: 25998-26147
cDNA
(Sanger)
(ID:Location)		 019_N05.ab1: 17599-22409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041290_010 0.0 - - thioredoxin family protein [Populus trichocarpa]
2 Hb_002750_050 0.0926787601 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
3 Hb_003430_090 0.1035137486 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000915_110 0.1037018441 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
5 Hb_012194_050 0.1168535917 - - Aspartyl aminopeptidase, putative [Ricinus communis]
6 Hb_004032_410 0.1187252958 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
7 Hb_023278_010 0.1219078877 - - Chaperone protein DnaJ [Glycine soja]
8 Hb_048141_020 0.1238826535 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
9 Hb_004659_020 0.1254352556 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
10 Hb_000392_370 0.1264492939 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
11 Hb_000705_120 0.1285395901 - - glycosyltransferase, putative [Ricinus communis]
12 Hb_017295_010 0.1288825842 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_002273_120 0.1293521684 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
14 Hb_001489_050 0.1312251011 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
15 Hb_172632_040 0.1332581971 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
16 Hb_005098_010 0.1347236736 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
17 Hb_152202_010 0.1377779394 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
18 Hb_000076_130 0.1382498752 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
19 Hb_006445_010 0.1389856216 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
20 Hb_000700_150 0.1392864017 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_041290_010 Hb_041290_010 Hb_002750_050 Hb_002750_050 Hb_041290_010--Hb_002750_050 Hb_003430_090 Hb_003430_090 Hb_041290_010--Hb_003430_090 Hb_000915_110 Hb_000915_110 Hb_041290_010--Hb_000915_110 Hb_012194_050 Hb_012194_050 Hb_041290_010--Hb_012194_050 Hb_004032_410 Hb_004032_410 Hb_041290_010--Hb_004032_410 Hb_023278_010 Hb_023278_010 Hb_041290_010--Hb_023278_010 Hb_002750_050--Hb_003430_090 Hb_000392_370 Hb_000392_370 Hb_002750_050--Hb_000392_370 Hb_000207_190 Hb_000207_190 Hb_002750_050--Hb_000207_190 Hb_013726_080 Hb_013726_080 Hb_002750_050--Hb_013726_080 Hb_002750_050--Hb_000915_110 Hb_003430_090--Hb_013726_080 Hb_003430_090--Hb_000392_370 Hb_003430_090--Hb_000207_190 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_000606_090 Hb_000606_090 Hb_000915_110--Hb_000606_090 Hb_000705_120 Hb_000705_120 Hb_000915_110--Hb_000705_120 Hb_000567_360 Hb_000567_360 Hb_000915_110--Hb_000567_360 Hb_030131_040 Hb_030131_040 Hb_000915_110--Hb_030131_040 Hb_001444_010 Hb_001444_010 Hb_000915_110--Hb_001444_010 Hb_001341_120 Hb_001341_120 Hb_000915_110--Hb_001341_120 Hb_152202_010 Hb_152202_010 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_003440_060 Hb_003440_060 Hb_004032_410--Hb_003440_060 Hb_001489_050 Hb_001489_050 Hb_004032_410--Hb_001489_050 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_004032_410--Hb_000915_080 Hb_048141_020 Hb_048141_020 Hb_023278_010--Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_023278_010--Hb_000816_100 Hb_023278_010--Hb_000076_130 Hb_006915_070 Hb_006915_070 Hb_023278_010--Hb_006915_070 Hb_006445_010 Hb_006445_010 Hb_023278_010--Hb_006445_010 Hb_023278_010--Hb_000544_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2179 7.02089 29.2081 32.9061 59.7385 59.3871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2344 14.6172 18.1405 21.2752 43.5888

CAGE analysis