Hb_041290_020

Information

Type -
Description -
Location Contig41290: 25876-44700
Sequence    

Annotation

kegg
ID pop:POPTR_0002s21800g
description POPTRDRAFT_552728; Centromere/kinetochore protein zw10
nr
ID XP_012080665.1
description PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
swissprot
ID O48626
description Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana GN=ZW10 PE=1 SV=1
trembl
ID A0A067K3N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13769 PE=4 SV=1
Gene Ontology
ID GO:0000775
description centromere kinetochore protein zw10 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40907: 26158-28792 , PASA_asmbl_40908: 28937-42375 , PASA_asmbl_40909: 42466-44610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041290_020 0.0 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
2 Hb_004846_220 0.0479303298 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
3 Hb_006483_110 0.0582407143 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
4 Hb_004109_080 0.0685133698 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
5 Hb_028960_020 0.0705752135 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
6 Hb_000138_100 0.074170504 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
7 Hb_000406_200 0.0744666615 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
8 Hb_001021_150 0.0749368734 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
9 Hb_015807_050 0.0749843531 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
10 Hb_003153_010 0.075825522 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
11 Hb_003878_150 0.0760459909 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
12 Hb_009898_050 0.0765057236 - - PREDICTED: beta-taxilin [Jatropha curcas]
13 Hb_002897_090 0.0765889118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001348_080 0.0767732959 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
15 Hb_007426_110 0.0768582422 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
16 Hb_002592_060 0.0768749548 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_800 0.0773332851 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000347_430 0.0783030295 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
19 Hb_008959_010 0.0786611054 - - conserved hypothetical protein [Ricinus communis]
20 Hb_013726_090 0.0787435507 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]

Gene co-expression network

sample Hb_041290_020 Hb_041290_020 Hb_004846_220 Hb_004846_220 Hb_041290_020--Hb_004846_220 Hb_006483_110 Hb_006483_110 Hb_041290_020--Hb_006483_110 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_028960_020 Hb_028960_020 Hb_041290_020--Hb_028960_020 Hb_000138_100 Hb_000138_100 Hb_041290_020--Hb_000138_100 Hb_000406_200 Hb_000406_200 Hb_041290_020--Hb_000406_200 Hb_004846_220--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_004846_220--Hb_006483_110 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_012498_010 Hb_012498_010 Hb_004109_080--Hb_012498_010 Hb_005291_050 Hb_005291_050 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_004109_080--Hb_002263_020 Hb_004109_080--Hb_000406_200 Hb_028960_020--Hb_007426_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_028960_020--Hb_004846_220 Hb_000138_100--Hb_002263_020 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_188281_040 Hb_188281_040 Hb_000406_200--Hb_188281_040 Hb_000406_200--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20779 2.75287 5.40378 4.94517 3.9562 5.54382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63188 4.56494 4.09786 5.59996 7.04725

CAGE analysis