Hb_041392_010

Information

Type -
Description -
Location Contig41392: 242-481
Sequence    

Annotation

kegg
ID rcu:RCOM_1527910
description hypothetical protein
nr
ID XP_012087652.1
description PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25172 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041392_010 0.0 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
2 Hb_033312_140 0.0734941074 - - RNA and export factor-binding family protein [Populus trichocarpa]
3 Hb_003656_140 0.0756052638 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
4 Hb_023001_050 0.0882640515 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
5 Hb_000606_080 0.0931287254 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
6 Hb_150204_010 0.0984877142 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_150360_010 0.0985037701 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
8 Hb_140291_010 0.0995212188 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
9 Hb_004198_010 0.1010020211 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_010691_060 0.1017333674 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
11 Hb_144598_030 0.1048891543 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
12 Hb_000364_060 0.1052321234 - - JHL03K20.4 [Jatropha curcas]
13 Hb_004450_010 0.1056642 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
14 Hb_012132_040 0.1062366399 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
15 Hb_004934_070 0.1069061357 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
16 Hb_002374_020 0.1073241548 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
17 Hb_002067_120 0.1094652358 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
18 Hb_003502_080 0.1097473147 - - vacuolar protein sorting, putative [Ricinus communis]
19 Hb_002272_180 0.1109854644 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
20 Hb_001341_050 0.1110070444 - - ATP synthase D chain, mitochondrial [Theobroma cacao]

Gene co-expression network

sample Hb_041392_010 Hb_041392_010 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_033312_140--Hb_150204_010 Hb_002774_070 Hb_002774_070 Hb_033312_140--Hb_002774_070 Hb_004198_010 Hb_004198_010 Hb_033312_140--Hb_004198_010 Hb_033312_140--Hb_003656_140 Hb_003434_060 Hb_003434_060 Hb_033312_140--Hb_003434_060 Hb_002023_020 Hb_002023_020 Hb_003656_140--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_003656_140--Hb_137403_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_000349_060 Hb_000349_060 Hb_023001_050--Hb_000349_060 Hb_105386_010 Hb_105386_010 Hb_023001_050--Hb_105386_010 Hb_000465_430 Hb_000465_430 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_150204_010--Hb_003434_060 Hb_150360_010--Hb_137403_010 Hb_004934_070 Hb_004934_070 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.1199 31.378 49.4483 67.5429 93.0966 213.052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.8515 66.0345 47.1371 51.3926 17.993

CAGE analysis