Hb_041476_010

Information

Type -
Description -
Location Contig41476: 47-853
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_012075355.1
description PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MRU6
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_26972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041476_010 0.0 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
2 Hb_002224_050 0.0414851258 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
3 Hb_000541_010 0.0718024897 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_003245_010 0.0756260905 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_165958_010 0.0759567952 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_117252_010 0.1103569892 - - hypothetical protein [Pseudomonas tolaasii]
7 Hb_007659_010 0.1166232149 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
8 Hb_042795_010 0.1207514677 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_053575_010 0.1299275939 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_003401_040 0.1340607427 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
11 Hb_011114_050 0.1381169909 - - -
12 Hb_013874_010 0.1407281164 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_017279_030 0.1440068038 - - -
14 Hb_028105_020 0.1550979001 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
15 Hb_162933_010 0.1562714351 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
16 Hb_003463_040 0.1586812667 - - -
17 Hb_003694_070 0.1630994006 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
18 Hb_007111_020 0.1671991502 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_024128_010 0.1699703246 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_139518_020 0.1720100075 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_041476_010 Hb_041476_010 Hb_002224_050 Hb_002224_050 Hb_041476_010--Hb_002224_050 Hb_000541_010 Hb_000541_010 Hb_041476_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_041476_010--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_041476_010--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_041476_010--Hb_117252_010 Hb_007659_010 Hb_007659_010 Hb_041476_010--Hb_007659_010 Hb_002224_050--Hb_007659_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_002224_050--Hb_165958_010 Hb_002224_050--Hb_117252_010 Hb_000541_010--Hb_003245_010 Hb_000541_010--Hb_165958_010 Hb_000541_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_000541_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_000541_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_000541_010--Hb_003401_040 Hb_003245_010--Hb_165958_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040 Hb_165958_010--Hb_117252_010 Hb_165958_010--Hb_042795_010 Hb_165958_010--Hb_053575_010 Hb_165958_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030 Hb_007044_280 Hb_007044_280 Hb_007659_010--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_007659_010--Hb_018591_040 Hb_007659_010--Hb_000541_010 Hb_007659_010--Hb_003245_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.069943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.10539

CAGE analysis