Hb_041534_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig41534: 592-1092
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23480g
description POPTRDRAFT_561557; hypothetical protein
nr
ID XP_012077166.1
description PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
swissprot
ID Q9C591
description Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1
trembl
ID A0A067KNY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07576 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf017-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41096: 552-857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041534_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
2 Hb_064692_010 0.0457192748 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_013591_010 0.0670707115 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
4 Hb_137612_010 0.0673603732 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002422_020 0.0733395858 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
6 Hb_000338_020 0.0833471826 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_157957_010 0.0881952991 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
8 Hb_002922_010 0.0892014052 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
9 Hb_000028_360 0.096238286 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_125201_010 0.0965582807 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
11 Hb_000134_010 0.0988060616 - - -
12 Hb_019978_010 0.0994177477 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_036754_040 0.1002551817 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_114932_010 0.1057325898 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_009707_010 0.1094067698 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
16 Hb_006648_030 0.1108597765 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
17 Hb_167802_010 0.1113497719 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_007728_010 0.1120119273 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
19 Hb_010573_030 0.1133531733 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002006_110 0.1143529335 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]

Gene co-expression network

sample Hb_041534_010 Hb_041534_010 Hb_064692_010 Hb_064692_010 Hb_041534_010--Hb_064692_010 Hb_013591_010 Hb_013591_010 Hb_041534_010--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_041534_010--Hb_137612_010 Hb_002422_020 Hb_002422_020 Hb_041534_010--Hb_002422_020 Hb_000338_020 Hb_000338_020 Hb_041534_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_041534_010--Hb_157957_010 Hb_064692_010--Hb_000338_020 Hb_064692_010--Hb_013591_010 Hb_064692_010--Hb_137612_010 Hb_064692_010--Hb_002422_020 Hb_064692_010--Hb_157957_010 Hb_013591_010--Hb_002422_020 Hb_013591_010--Hb_137612_010 Hb_010573_030 Hb_010573_030 Hb_013591_010--Hb_010573_030 Hb_007728_010 Hb_007728_010 Hb_013591_010--Hb_007728_010 Hb_137612_010--Hb_002422_020 Hb_137612_010--Hb_007728_010 Hb_000134_010 Hb_000134_010 Hb_137612_010--Hb_000134_010 Hb_002422_020--Hb_010573_030 Hb_002422_020--Hb_007728_010 Hb_114932_010 Hb_114932_010 Hb_000338_020--Hb_114932_010 Hb_009683_060 Hb_009683_060 Hb_000338_020--Hb_009683_060 Hb_009707_010 Hb_009707_010 Hb_000338_020--Hb_009707_010 Hb_125201_010 Hb_125201_010 Hb_000338_020--Hb_125201_010 Hb_167802_010 Hb_167802_010 Hb_000338_020--Hb_167802_010 Hb_034581_010 Hb_034581_010 Hb_157957_010--Hb_034581_010 Hb_036754_040 Hb_036754_040 Hb_157957_010--Hb_036754_040 Hb_110356_010 Hb_110356_010 Hb_157957_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_157957_010--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_157957_010--Hb_002548_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.81245 1.57476 2.48268 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0436813 0

CAGE analysis