Hb_041774_010

Information

Type -
Description -
Location Contig41774: 3-611
Sequence    

Annotation

kegg
ID pop:POPTR_0178s00210g
description hypothetical protein
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID U7E0P0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0178s00210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041774_010 0.0 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_001767_020 0.1543246083 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
3 Hb_003073_130 0.1816043601 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
4 Hb_098466_010 0.1888568281 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
5 Hb_001668_030 0.2062485907 - - conserved hypothetical protein [Ricinus communis]
6 Hb_058884_010 0.2171920564 - - PREDICTED: barwin-like [Jatropha curcas]
7 Hb_005867_080 0.2256468785 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
8 Hb_005656_060 0.2269094211 - - -
9 Hb_004460_020 0.2376042971 - - chaperone protein DNAj, putative [Ricinus communis]
10 Hb_002890_230 0.2406004556 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
11 Hb_000061_410 0.2442223195 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_000012_300 0.2474925247 - - -
13 Hb_004650_020 0.2527933601 - - -
14 Hb_000457_160 0.2542874416 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
15 Hb_001775_040 0.2551316202 - - -
16 Hb_002253_110 0.2563352809 - - cysteine desulfurylase, putative [Ricinus communis]
17 Hb_002983_020 0.2587698006 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
18 Hb_001268_230 0.2594545638 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
19 Hb_004648_040 0.2657651542 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
20 Hb_008147_030 0.2664963797 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]

Gene co-expression network

sample Hb_041774_010 Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_041774_010--Hb_001767_020 Hb_003073_130 Hb_003073_130 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_001668_030 Hb_001668_030 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_005867_080 Hb_005867_080 Hb_041774_010--Hb_005867_080 Hb_004460_020 Hb_004460_020 Hb_001767_020--Hb_004460_020 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001668_030 Hb_001775_040 Hb_001775_040 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_000061_410 Hb_000061_410 Hb_003073_130--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_003073_130--Hb_000155_070 Hb_014067_010 Hb_014067_010 Hb_003073_130--Hb_014067_010 Hb_000907_100 Hb_000907_100 Hb_003073_130--Hb_000907_100 Hb_003627_020 Hb_003627_020 Hb_003073_130--Hb_003627_020 Hb_004884_060 Hb_004884_060 Hb_003073_130--Hb_004884_060 Hb_137153_010 Hb_137153_010 Hb_098466_010--Hb_137153_010 Hb_172112_010 Hb_172112_010 Hb_098466_010--Hb_172112_010 Hb_098466_010--Hb_001767_020 Hb_005656_060 Hb_005656_060 Hb_098466_010--Hb_005656_060 Hb_023323_010 Hb_023323_010 Hb_098466_010--Hb_023323_010 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_004480_070 Hb_004480_070 Hb_001668_030--Hb_004480_070 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001668_030--Hb_004460_020 Hb_058884_010--Hb_003073_130 Hb_087340_010 Hb_087340_010 Hb_058884_010--Hb_087340_010 Hb_053543_010 Hb_053543_010 Hb_058884_010--Hb_053543_010 Hb_058884_010--Hb_001668_030 Hb_000384_040 Hb_000384_040 Hb_058884_010--Hb_000384_040 Hb_005867_080--Hb_005656_060 Hb_004102_130 Hb_004102_130 Hb_005867_080--Hb_004102_130 Hb_011021_030 Hb_011021_030 Hb_005867_080--Hb_011021_030 Hb_000208_290 Hb_000208_290 Hb_005867_080--Hb_000208_290 Hb_004156_060 Hb_004156_060 Hb_005867_080--Hb_004156_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.556404 0 0 0 1.97037 2.28332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0987712 0.155256 0.952452 0.0318071 0

CAGE analysis