Hb_041813_030

Information

Type -
Description -
Location Contig41813: 11968-14269
Sequence    

Annotation

kegg
ID csv:101213920
description cytochrome c oxidase subunit 1-like
nr
ID ABY83960.1
description cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
swissprot
ID P08743
description Cytochrome c oxidase subunit 1 OS=Oenothera berteroana GN=COX1 PE=3 SV=2
trembl
ID B4XVW4
description Cytochrome c oxidase subunit 1 (Fragment) OS=Calochone redingii GN=cox1 PE=3 SV=1
Gene Ontology
ID GO:0005743
description cytochrome oxidase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_030 0.0 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
2 Hb_042463_070 0.0760733306 - - 60S ribosomal protein L16, putative [Ricinus communis]
3 Hb_156746_010 0.0834715676 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_077242_020 0.0843292776 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
5 Hb_006040_030 0.0901384131 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
6 Hb_062192_030 0.1061720658 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
7 Hb_013420_050 0.1086857102 - - hypothetical protein (mitochondrion) [Vicia faba]
8 Hb_012163_050 0.1112176355 - - ATPase subunit [Medicago truncatula]
9 Hb_006040_010 0.1201474399 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
10 Hb_171685_060 0.123797679 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
11 Hb_000920_020 0.1238642924 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
12 Hb_034168_070 0.1258973141 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
13 Hb_189099_020 0.1290645401 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
14 Hb_006040_020 0.1294772061 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
15 Hb_000879_260 0.130690038 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
16 Hb_042463_030 0.134295215 - - unknown [Lotus japonicus]
17 Hb_001338_080 0.1386785739 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
18 Hb_027357_010 0.1391574896 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_013420_020 0.1399407591 - - conserved hypothetical protein [Ricinus communis]
20 Hb_101462_010 0.1423098307 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_041813_030 Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_077242_020--Hb_006040_030 Hb_079902_010 Hb_079902_010 Hb_077242_020--Hb_079902_010 Hb_101462_010 Hb_101462_010 Hb_077242_020--Hb_101462_010 Hb_077242_020--Hb_156746_010 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_012163_050 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_013420_050--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_013420_050--Hb_171685_080 Hb_013420_050--Hb_006040_010 Hb_013420_050--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127689 0.546905 0.52428 0.720478 0.0801208 0.271339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529831 0.0208431 0.865895 0.523197 32.9289

CAGE analysis