Hb_041813_050

Information

Type -
Description -
Location Contig41813: 30309-31774
Sequence    

Annotation

kegg
ID ath:ArthMp059
description hypothetical protein
nr
ID YP_173435.1
description hypothetical protein NitaMp096 [Nicotiana tabacum]
swissprot
ID P93318
description Uncharacterized mitochondrial protein AtMg00660 OS=Arabidopsis thaliana GN=AtMg00660 PE=4 SV=1
trembl
ID Q5M9X8
description Uncharacterized protein OS=Nicotiana tabacum GN=orf166a PE=4 SV=1
Gene Ontology
ID GO:0005739
description psii 32 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41364: 32712-33331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_050 0.0 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
2 Hb_062192_060 0.1424814076 - - maturase (mitochondrion) [Hevea brasiliensis]
3 Hb_005154_090 0.1645334292 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_003375_050 0.1681582396 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_041813_010 0.1744355866 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012092_080 0.1806990151 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
7 Hb_185058_020 0.1830610122 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_097021_010 0.1846749612 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
9 Hb_003362_020 0.1873764655 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
10 Hb_142570_010 0.1989815167 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
11 Hb_034197_020 0.1996395177 - - hypothetical protein VITISV_041099 [Vitis vinifera]
12 Hb_102602_020 0.2012661155 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
13 Hb_069147_010 0.2037253842 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
14 Hb_087161_010 0.206273284 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000414_180 0.2134978071 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
16 Hb_002482_050 0.2143322749 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
17 Hb_004520_010 0.2170311797 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_000260_730 0.2246138943 - - -
19 Hb_127552_050 0.2264497342 - - hypothetical protein VITISV_030752 [Vitis vinifera]
20 Hb_041813_040 0.2297637716 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_041813_050 Hb_041813_050 Hb_062192_060 Hb_062192_060 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_005154_090--Hb_003375_050 Hb_041813_060 Hb_041813_060 Hb_005154_090--Hb_041813_060 Hb_062192_030 Hb_062192_030 Hb_005154_090--Hb_062192_030 Hb_041813_040 Hb_041813_040 Hb_005154_090--Hb_041813_040 Hb_034197_020 Hb_034197_020 Hb_003375_050--Hb_034197_020 Hb_003375_050--Hb_002482_050 Hb_003375_050--Hb_062192_060 Hb_151401_010 Hb_151401_010 Hb_003375_050--Hb_151401_010 Hb_102602_020 Hb_102602_020 Hb_041813_010--Hb_102602_020 Hb_000076_050 Hb_000076_050 Hb_041813_010--Hb_000076_050 Hb_007520_070 Hb_007520_070 Hb_041813_010--Hb_007520_070 Hb_000454_160 Hb_000454_160 Hb_041813_010--Hb_000454_160 Hb_027010_030 Hb_027010_030 Hb_041813_010--Hb_027010_030 Hb_097021_010 Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_001523_030 Hb_001523_030 Hb_012092_080--Hb_001523_030 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_001282_030 Hb_001282_030 Hb_012092_080--Hb_001282_030 Hb_012092_080--Hb_041813_010 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0891136 0.49948 0.243106 0.678452 0.119536 0.178484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0408146 0 1.07476 2.13513 7.7053

CAGE analysis