Hb_042026_010

Information

Type -
Description -
Location Contig42026: 1547-1836
Sequence    

Annotation

kegg
ID rcu:RCOM_1259230
description RNA binding protein, putative
nr
ID XP_002530529.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LIS2
description Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1
trembl
ID B9SX10
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1259230 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042026_010 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_006692_050 0.0621876864 - - Chloroplastic lipocalin [Theobroma cacao]
3 Hb_000005_210 0.1313887042 - - -
4 Hb_000041_170 0.1313887042 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
5 Hb_000047_040 0.1313887042 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
6 Hb_000072_260 0.1313887042 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
7 Hb_000081_170 0.1313887042 - - -
8 Hb_000088_250 0.1313887042 - - -
9 Hb_000110_220 0.1313887042 - - -
10 Hb_000110_360 0.1313887042 - - -
11 Hb_000111_510 0.1313887042 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000122_170 0.1313887042 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
13 Hb_000122_180 0.1313887042 - - -
14 Hb_000130_150 0.1313887042 - - -
15 Hb_000139_020 0.1313887042 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000140_180 0.1313887042 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000141_140 0.1313887042 - - PREDICTED: uncharacterized protein LOC104890406 [Beta vulgaris subsp. vulgaris]
18 Hb_000156_050 0.1313887042 - - -
19 Hb_000241_020 0.1313887042 - - -
20 Hb_000249_010 0.1313887042 - - hypothetical protein JCGZ_26531 [Jatropha curcas]

Gene co-expression network

sample Hb_042026_010 Hb_042026_010 Hb_006692_050 Hb_006692_050 Hb_042026_010--Hb_006692_050 Hb_000005_210 Hb_000005_210 Hb_042026_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_042026_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_042026_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_042026_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_042026_010--Hb_000081_170 Hb_007761_010 Hb_007761_010 Hb_006692_050--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_006692_050--Hb_128173_010 Hb_111332_010 Hb_111332_010 Hb_006692_050--Hb_111332_010 Hb_000795_010 Hb_000795_010 Hb_006692_050--Hb_000795_010 Hb_105480_010 Hb_105480_010 Hb_006692_050--Hb_105480_010 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000005_210--Hb_000088_250 Hb_000110_220 Hb_000110_220 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.568991 16.1173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis