Hb_042083_030

Information

Type -
Description -
Location Contig42083: 30848-32254
Sequence    

Annotation

kegg
ID rcu:RCOM_1250190
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002522237.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGQ9
description Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1
trembl
ID B9S8B8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1250190 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41572: 22668-29931 , PASA_asmbl_41573: 30800-32472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000076_030 0.108370876 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
3 Hb_048476_140 0.1086622478 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
4 Hb_004041_050 0.11870694 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_000193_340 0.1250410284 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_000417_380 0.1278688604 - - SecY protein transport family protein [Theobroma cacao]
7 Hb_161396_010 0.1301004222 - - hypothetical protein F383_26394 [Gossypium arboreum]
8 Hb_001180_010 0.1399332978 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
9 Hb_006153_160 0.1464056358 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
10 Hb_000025_160 0.1483753167 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
11 Hb_000529_010 0.1490593772 - - cyclin d, putative [Ricinus communis]
12 Hb_000327_360 0.1494310027 - - unnamed protein product [Coffea canephora]
13 Hb_004724_170 0.1504225889 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
14 Hb_001369_010 0.1529125625 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
15 Hb_002759_220 0.1532717956 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
16 Hb_007101_260 0.1534339812 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
17 Hb_006889_030 0.1540844174 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
18 Hb_000808_150 0.1552872098 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
19 Hb_022693_110 0.1562366532 - - phosphate transporter [Manihot esculenta]
20 Hb_121089_050 0.1584946159 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_042083_030 Hb_042083_030 Hb_000076_030 Hb_000076_030 Hb_042083_030--Hb_000076_030 Hb_048476_140 Hb_048476_140 Hb_042083_030--Hb_048476_140 Hb_004041_050 Hb_004041_050 Hb_042083_030--Hb_004041_050 Hb_000193_340 Hb_000193_340 Hb_042083_030--Hb_000193_340 Hb_000417_380 Hb_000417_380 Hb_042083_030--Hb_000417_380 Hb_161396_010 Hb_161396_010 Hb_042083_030--Hb_161396_010 Hb_000076_030--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_000076_030--Hb_001180_010 Hb_000076_030--Hb_161396_010 Hb_022693_110 Hb_022693_110 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_048476_140--Hb_001180_010 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_161396_010 Hb_004041_050--Hb_001180_010 Hb_004041_050--Hb_000076_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_007101_260 Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_000193_340--Hb_161396_010 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_000580_110 Hb_000580_110 Hb_000417_380--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_000417_380--Hb_000236_180 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_000077_310 Hb_000077_310 Hb_000417_380--Hb_000077_310 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_161396_010--Hb_007101_260 Hb_161396_010--Hb_000808_150 Hb_161396_010--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202583 0.641305 3.61853 6.27741 0.142036 0.0557944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134518 0.291018 1.23947 1.33181 4.41549

CAGE analysis