Hb_042123_010

Information

Type -
Description -
Location Contig42123: 3-935
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001615mg
description hypothetical protein
nr
ID XP_011003373.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID M5WPY0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001615mg PE=3 SV=1
Gene Ontology
ID GO:0005515
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042123_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
2 Hb_077976_010 0.0454110225 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_001097_110 0.0569958905 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_001951_050 0.0574340651 - - chlorophyll A/B binding protein, putative [Ricinus communis]
5 Hb_001140_110 0.0610843247 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
6 Hb_001080_290 0.0658085236 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_003058_150 0.0758596612 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
8 Hb_005474_070 0.0796044099 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
9 Hb_000940_120 0.0814685704 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
10 Hb_007534_080 0.0844101681 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
11 Hb_000815_120 0.0852011422 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_004143_080 0.0855105723 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
13 Hb_003805_110 0.08621006 - - PREDICTED: laccase-11-like [Jatropha curcas]
14 Hb_002445_020 0.0866620245 - - -
15 Hb_004818_010 0.086999071 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
16 Hb_003647_070 0.0875018989 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
17 Hb_002042_220 0.0888053201 - - Kinesin heavy chain, putative [Ricinus communis]
18 Hb_002010_040 0.0919494862 - - -
19 Hb_000007_290 0.0927913437 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
20 Hb_000768_080 0.0952867777 - - Mlo protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_042123_010 Hb_042123_010 Hb_077976_010 Hb_077976_010 Hb_042123_010--Hb_077976_010 Hb_001097_110 Hb_001097_110 Hb_042123_010--Hb_001097_110 Hb_001951_050 Hb_001951_050 Hb_042123_010--Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_042123_010--Hb_001140_110 Hb_001080_290 Hb_001080_290 Hb_042123_010--Hb_001080_290 Hb_003058_150 Hb_003058_150 Hb_042123_010--Hb_003058_150 Hb_077976_010--Hb_001097_110 Hb_077976_010--Hb_001140_110 Hb_077976_010--Hb_001080_290 Hb_077976_010--Hb_001951_050 Hb_000815_120 Hb_000815_120 Hb_077976_010--Hb_000815_120 Hb_001097_110--Hb_001140_110 Hb_001097_110--Hb_001951_050 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_003805_110 Hb_003805_110 Hb_001097_110--Hb_003805_110 Hb_007534_080 Hb_007534_080 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150 Hb_001951_050--Hb_001140_110 Hb_001951_050--Hb_001080_290 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_001951_050--Hb_000815_120 Hb_001140_110--Hb_003058_150 Hb_001140_110--Hb_003805_110 Hb_001140_110--Hb_001080_290 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_001080_290--Hb_001097_110 Hb_005474_070 Hb_005474_070 Hb_003058_150--Hb_005474_070 Hb_003058_150--Hb_003805_110 Hb_003058_150--Hb_000940_120 Hb_003647_070 Hb_003647_070 Hb_003058_150--Hb_003647_070 Hb_003058_150--Hb_007534_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0726874 0.836849 1.81638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0552898 0 0 0 8.40651

CAGE analysis