Hb_042141_010

Information

Type -
Description -
Location Contig42141: 2-886
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042141_010 0.0 - - -
2 Hb_007507_030 0.0855031317 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_063869_010 0.0977224697 - - JHL22C18.10 [Jatropha curcas]
4 Hb_052764_010 0.1108435971 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
5 Hb_101778_010 0.1148398003 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000205_220 0.1435647657 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
7 Hb_137701_020 0.1545786632 - - putative protein kinase [Oryza sativa Japonica Group]
8 Hb_062503_010 0.159025737 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_010091_040 0.1591094564 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_005183_060 0.165359823 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
11 Hb_001205_170 0.1822209387 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
12 Hb_004880_120 0.1921299114 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
13 Hb_011344_150 0.1981489023 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_130579_050 0.2001075459 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
15 Hb_006043_030 0.2085691991 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_002025_240 0.2113191255 - - -
17 Hb_144813_010 0.2158763395 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
18 Hb_003582_050 0.216617488 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
19 Hb_002836_030 0.2169709527 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_011888_010 0.2173414038 - - Receptor like protein 46, putative [Theobroma cacao]

Gene co-expression network

sample Hb_042141_010 Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_042141_010--Hb_007507_030 Hb_063869_010 Hb_063869_010 Hb_042141_010--Hb_063869_010 Hb_052764_010 Hb_052764_010 Hb_042141_010--Hb_052764_010 Hb_101778_010 Hb_101778_010 Hb_042141_010--Hb_101778_010 Hb_000205_220 Hb_000205_220 Hb_042141_010--Hb_000205_220 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020 Hb_007507_030--Hb_101778_010 Hb_062503_010 Hb_062503_010 Hb_007507_030--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_007507_030--Hb_005183_060 Hb_000224_250 Hb_000224_250 Hb_007507_030--Hb_000224_250 Hb_007507_030--Hb_063869_010 Hb_063869_010--Hb_137701_020 Hb_063869_010--Hb_000205_220 Hb_063869_010--Hb_052764_010 Hb_004880_120 Hb_004880_120 Hb_063869_010--Hb_004880_120 Hb_052764_010--Hb_000205_220 Hb_010091_040 Hb_010091_040 Hb_052764_010--Hb_010091_040 Hb_007858_030 Hb_007858_030 Hb_052764_010--Hb_007858_030 Hb_002284_040 Hb_002284_040 Hb_052764_010--Hb_002284_040 Hb_101778_010--Hb_062503_010 Hb_101778_010--Hb_005183_060 Hb_101778_010--Hb_000224_250 Hb_002876_010 Hb_002876_010 Hb_101778_010--Hb_002876_010 Hb_000205_220--Hb_010091_040 Hb_000205_220--Hb_007858_030 Hb_000205_220--Hb_002284_040 Hb_137701_020--Hb_004880_120 Hb_137701_020--Hb_005183_060 Hb_004176_090 Hb_004176_090 Hb_137701_020--Hb_004176_090 Hb_137701_020--Hb_007507_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.146989 0.0273719 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.129541

CAGE analysis