Hb_042202_010

Information

Type -
Description -
Location Contig42202: 9503-13965
Sequence    

Annotation

kegg
ID cmo:103502835
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
nr
ID XP_008465169.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
swissprot
ID Q9FIJ2
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1
trembl
ID A0A0A0LDA2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845450 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41736: 9321-12393
cDNA
(Sanger)
(ID:Location)		 033_L06.ab1: 9475-12321

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042202_010 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
2 Hb_002477_240 0.0619766681 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
3 Hb_001754_150 0.079360817 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
4 Hb_001214_030 0.0889342861 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
5 Hb_000417_110 0.0914582088 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
6 Hb_000684_090 0.0947241558 transcription factor TF Family: S1Fa-like -
7 Hb_000025_530 0.0976573716 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
8 Hb_000392_270 0.0979532113 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_000798_030 0.0982029792 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
10 Hb_000190_060 0.098500404 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
11 Hb_004738_080 0.0986052146 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
12 Hb_000703_140 0.1006020238 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
13 Hb_001951_110 0.1010847557 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
14 Hb_000483_160 0.1027846054 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
15 Hb_000270_840 0.1032709606 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
16 Hb_000260_080 0.1035099983 - - thioredoxin H-type 1 [Hevea brasiliensis]
17 Hb_000454_050 0.1035254896 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
18 Hb_001804_040 0.1047114889 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003001_060 0.1059549498 - - wound-responsive family protein [Populus trichocarpa]
20 Hb_001828_090 0.10636876 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_042202_010 Hb_042202_010 Hb_002477_240 Hb_002477_240 Hb_042202_010--Hb_002477_240 Hb_001754_150 Hb_001754_150 Hb_042202_010--Hb_001754_150 Hb_001214_030 Hb_001214_030 Hb_042202_010--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_042202_010--Hb_000417_110 Hb_000684_090 Hb_000684_090 Hb_042202_010--Hb_000684_090 Hb_000025_530 Hb_000025_530 Hb_042202_010--Hb_000025_530 Hb_002477_240--Hb_001754_150 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_000260_050 Hb_000260_050 Hb_002477_240--Hb_000260_050 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_001019_090 Hb_001019_090 Hb_001754_150--Hb_001019_090 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_001754_150--Hb_000260_050 Hb_000392_270 Hb_000392_270 Hb_001754_150--Hb_000392_270 Hb_000190_060 Hb_000190_060 Hb_001214_030--Hb_000190_060 Hb_001214_030--Hb_002477_240 Hb_003058_070 Hb_003058_070 Hb_001214_030--Hb_003058_070 Hb_001214_030--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_001214_030--Hb_003001_060 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003058_070 Hb_000417_110--Hb_003001_060 Hb_001828_090 Hb_001828_090 Hb_000684_090--Hb_001828_090 Hb_000270_270 Hb_000270_270 Hb_000684_090--Hb_000270_270 Hb_001512_070 Hb_001512_070 Hb_000684_090--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_011360_140 Hb_011360_140 Hb_000684_090--Hb_011360_140 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_000025_530--Hb_002477_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0206 4.3777 12.8144 5.97738 32.6076 24.2803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3824 49.3569 20.2032 4.91077 3.19519

CAGE analysis