Hb_042202_020

Information

Type -
Description -
Location Contig42202: 16428-17738
Sequence    

Annotation

kegg
ID tcc:TCM_003170
description Eukaryotic release factor 1-3 isoform 1
nr
ID XP_007049919.1
description Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
swissprot
ID P35614
description Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1
trembl
ID A0A061DPR1
description Eukaryotic release factor 1-3 isoform 1 OS=Theobroma cacao GN=TCM_003170 PE=4 SV=1
Gene Ontology
ID GO:0016149
description eukaryotic peptide chain release factor subunit 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41740: 17345-17550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042202_020 0.0 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
2 Hb_033234_010 0.0894138748 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
3 Hb_001268_300 0.105789388 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001008_110 0.1099623586 - - -
5 Hb_002833_020 0.1104058946 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_000527_140 0.1125512094 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
7 Hb_003142_060 0.1163760755 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002888_040 0.1169246404 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
9 Hb_001307_200 0.1172496384 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
10 Hb_000024_130 0.1201120195 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002671_060 0.1226714982 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
12 Hb_132840_030 0.1228807319 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
13 Hb_025432_010 0.1235954428 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
14 Hb_064985_010 0.1246850738 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
15 Hb_000417_280 0.1268762278 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000085_380 0.1269188825 - - conserved hypothetical protein [Ricinus communis]
17 Hb_073973_020 0.1284825744 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
18 Hb_002003_040 0.1316738196 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
19 Hb_073808_010 0.1335304998 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
20 Hb_004421_010 0.1355918698 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_042202_020 Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_001008_110 Hb_001008_110 Hb_042202_020--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_033234_010--Hb_002833_020 Hb_000085_380 Hb_000085_380 Hb_033234_010--Hb_000085_380 Hb_000072_020 Hb_000072_020 Hb_033234_010--Hb_000072_020 Hb_132840_030 Hb_132840_030 Hb_033234_010--Hb_132840_030 Hb_000120_310 Hb_000120_310 Hb_033234_010--Hb_000120_310 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_001008_110--Hb_000417_280 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_002833_020--Hb_000120_310 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003106_230 Hb_003106_230 Hb_003142_060--Hb_003106_230 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46207 42.931 22.7622 37.2897 1.6628 2.93699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27847 2.52868 3.65051 40.5248 31.7852

CAGE analysis