Hb_042239_010

Information

Type -
Description -
Location Contig42239: 2457-6500
Sequence    

Annotation

kegg
ID rcu:RCOM_1080970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_011020398.1
description PREDICTED: receptor-like protein 12 [Populus euphratica]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID B9RMI5
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042239_010 0.0 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
2 Hb_048653_010 0.0012626982 - - PREDICTED: mavicyanin [Jatropha curcas]
3 Hb_013654_020 0.0014049776 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
4 Hb_000370_050 0.0042783086 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_003702_020 0.0043138421 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
6 Hb_008092_010 0.0047577199 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
7 Hb_008221_010 0.0050415749 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
8 Hb_007592_010 0.0069043262 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
9 Hb_005426_010 0.0070585147 - - polyprotein [Oryza australiensis]
10 Hb_008953_020 0.0099627691 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
11 Hb_000135_040 0.0101547982 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
12 Hb_002342_040 0.0174443348 - - FERONIA, partial [Arabis alpina]
13 Hb_001817_070 0.0177879509 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_154646_010 0.0206889248 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_122911_010 0.0246464518 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_000045_270 0.0303312175 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010452_030 0.0330222048 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
18 Hb_001100_020 0.034339446 - - -
19 Hb_039814_010 0.0365474415 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
20 Hb_000238_010 0.0381336372 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_042239_010 Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_042239_010--Hb_048653_010 Hb_013654_020 Hb_013654_020 Hb_042239_010--Hb_013654_020 Hb_000370_050 Hb_000370_050 Hb_042239_010--Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_042239_010--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_042239_010--Hb_008092_010 Hb_008221_010 Hb_008221_010 Hb_042239_010--Hb_008221_010 Hb_048653_010--Hb_013654_020 Hb_048653_010--Hb_008221_010 Hb_048653_010--Hb_000370_050 Hb_048653_010--Hb_003702_020 Hb_048653_010--Hb_008092_010 Hb_013654_020--Hb_008221_010 Hb_013654_020--Hb_000370_050 Hb_013654_020--Hb_003702_020 Hb_013654_020--Hb_008092_010 Hb_000370_050--Hb_003702_020 Hb_000370_050--Hb_008092_010 Hb_007592_010 Hb_007592_010 Hb_000370_050--Hb_007592_010 Hb_005426_010 Hb_005426_010 Hb_000370_050--Hb_005426_010 Hb_003702_020--Hb_008092_010 Hb_003702_020--Hb_007592_010 Hb_003702_020--Hb_005426_010 Hb_008092_010--Hb_007592_010 Hb_008092_010--Hb_005426_010 Hb_008953_020 Hb_008953_020 Hb_008221_010--Hb_008953_020 Hb_000135_040 Hb_000135_040 Hb_008221_010--Hb_000135_040 Hb_008221_010--Hb_000370_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.226718 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.101326 0

CAGE analysis