Hb_042463_010

Information

Type -
Description -
Location Contig42463: 12304-15286
Sequence    

Annotation

kegg
ID egr:104419302
description cytochrome c oxidase subunit 2
nr
ID AHY20296.1
description cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
swissprot
ID P27168
description Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1
trembl
ID A0A023VX25
description Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=1
Gene Ontology
ID GO:0005743
description cytochrome c oxidase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41982: 13446-13711 , PASA_asmbl_41983: 13750-15107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_010 0.0 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
2 Hb_016734_040 0.1120278578 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_041813_040 0.1422366177 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
4 Hb_001221_240 0.1489316011 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000920_100 0.1500587932 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_169948_010 0.1629237003 - - hypothetical protein VITISV_006524 [Vitis vinifera]
7 Hb_006483_120 0.1655897732 - - DNA binding protein, putative [Ricinus communis]
8 Hb_005183_030 0.1699657643 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
9 Hb_094437_020 0.1707253191 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_010620_030 0.1719304883 - - beta-amyrin synthase [Euphorbia tirucalli]
11 Hb_000574_330 0.1731105084 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_000347_320 0.1745850842 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_005092_070 0.1753657646 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_000230_490 0.1836869063 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004068_010 0.1848333094 - - beta-amyrin synthase [Euphorbia tirucalli]
16 Hb_000254_080 0.1853102257 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
17 Hb_000134_080 0.1863748697 - - synaptotagmin, putative [Ricinus communis]
18 Hb_000439_020 0.1891234394 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
19 Hb_005779_090 0.1915159002 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
20 Hb_046117_030 0.1937259354 - - sialyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_042463_010 Hb_042463_010 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_001221_240 Hb_001221_240 Hb_042463_010--Hb_001221_240 Hb_000920_100 Hb_000920_100 Hb_042463_010--Hb_000920_100 Hb_169948_010 Hb_169948_010 Hb_042463_010--Hb_169948_010 Hb_006483_120 Hb_006483_120 Hb_042463_010--Hb_006483_120 Hb_005183_030 Hb_005183_030 Hb_016734_040--Hb_005183_030 Hb_016734_040--Hb_169948_010 Hb_094437_020 Hb_094437_020 Hb_016734_040--Hb_094437_020 Hb_149345_010 Hb_149345_010 Hb_016734_040--Hb_149345_010 Hb_002631_110 Hb_002631_110 Hb_016734_040--Hb_002631_110 Hb_000574_330 Hb_000574_330 Hb_041813_040--Hb_000574_330 Hb_011649_030 Hb_011649_030 Hb_041813_040--Hb_011649_030 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_127552_050 Hb_127552_050 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_159308_020 Hb_159308_020 Hb_001221_240--Hb_159308_020 Hb_000552_010 Hb_000552_010 Hb_001221_240--Hb_000552_010 Hb_000975_170 Hb_000975_170 Hb_001221_240--Hb_000975_170 Hb_002400_300 Hb_002400_300 Hb_001221_240--Hb_002400_300 Hb_001832_170 Hb_001832_170 Hb_001221_240--Hb_001832_170 Hb_004837_080 Hb_004837_080 Hb_000920_100--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_000920_100--Hb_000254_080 Hb_000230_490 Hb_000230_490 Hb_000920_100--Hb_000230_490 Hb_004934_130 Hb_004934_130 Hb_000920_100--Hb_004934_130 Hb_089124_010 Hb_089124_010 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140 Hb_066293_010 Hb_066293_010 Hb_169948_010--Hb_066293_010 Hb_125961_010 Hb_125961_010 Hb_169948_010--Hb_125961_010 Hb_169948_010--Hb_004934_130 Hb_057880_020 Hb_057880_020 Hb_169948_010--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_169948_010--Hb_000462_160 Hb_027337_130 Hb_027337_130 Hb_169948_010--Hb_027337_130 Hb_182651_020 Hb_182651_020 Hb_006483_120--Hb_182651_020 Hb_010620_030 Hb_010620_030 Hb_006483_120--Hb_010620_030 Hb_000439_020 Hb_000439_020 Hb_006483_120--Hb_000439_020 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.970826 4.90282 1.61714 11.2364 0.526256 0.458812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0589762 0 0.677065 2.46982 30.1715

CAGE analysis