Hb_042463_050

Information

Type -
Description -
Location Contig42463: 31034-31452
Sequence    

Annotation

kegg
ID rcu:RCOM_2145560
description hypothetical protein
nr
ID XP_002535310.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2111140 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41995: 29793-30581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004884_210 0.1856421787 - - PREDICTED: mitoferrin-like [Jatropha curcas]
3 Hb_024468_040 0.1865042817 - - -
4 Hb_172426_010 0.1929569807 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
5 Hb_004372_050 0.2002342567 - - putative receptor-like protein kinase [Morus notabilis]
6 Hb_001999_050 0.2032907106 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
7 Hb_002030_050 0.2049169913 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
8 Hb_000311_110 0.2081108144 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_007575_020 0.2108629371 - - cytochrome P450, putative [Ricinus communis]
10 Hb_117001_010 0.2108633008 - - -
11 Hb_010863_070 0.2116631119 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
12 Hb_001205_170 0.2131938571 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
13 Hb_002990_020 0.2168719943 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
14 Hb_000289_090 0.2178160233 - - -
15 Hb_002013_030 0.2197080477 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
16 Hb_119832_010 0.2207333879 - - -
17 Hb_005401_010 0.2243540327 - - -
18 Hb_018105_010 0.227850548 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
19 Hb_000269_040 0.2307334991 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_009785_020 0.2319630191 - - PREDICTED: nucleolin [Populus euphratica]

Gene co-expression network

sample Hb_042463_050 Hb_042463_050 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_024468_040 Hb_024468_040 Hb_042463_050--Hb_024468_040 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050 Hb_003106_250 Hb_003106_250 Hb_004884_210--Hb_003106_250 Hb_034013_010 Hb_034013_010 Hb_004884_210--Hb_034013_010 Hb_010055_020 Hb_010055_020 Hb_004884_210--Hb_010055_020 Hb_004884_210--Hb_172426_010 Hb_001205_170 Hb_001205_170 Hb_004884_210--Hb_001205_170 Hb_000363_050 Hb_000363_050 Hb_004884_210--Hb_000363_050 Hb_027204_010 Hb_027204_010 Hb_024468_040--Hb_027204_010 Hb_132317_010 Hb_132317_010 Hb_024468_040--Hb_132317_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_007193_050 Hb_007193_050 Hb_024468_040--Hb_007193_050 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_000417_150 Hb_000417_150 Hb_172426_010--Hb_000417_150 Hb_004994_200 Hb_004994_200 Hb_172426_010--Hb_004994_200 Hb_000236_430 Hb_000236_430 Hb_172426_010--Hb_000236_430 Hb_027337_050 Hb_027337_050 Hb_172426_010--Hb_027337_050 Hb_172426_010--Hb_001205_170 Hb_002990_020 Hb_002990_020 Hb_004372_050--Hb_002990_020 Hb_167136_010 Hb_167136_010 Hb_004372_050--Hb_167136_010 Hb_000289_090 Hb_000289_090 Hb_004372_050--Hb_000289_090 Hb_010863_070 Hb_010863_070 Hb_004372_050--Hb_010863_070 Hb_002471_280 Hb_002471_280 Hb_004372_050--Hb_002471_280 Hb_004643_020 Hb_004643_020 Hb_004372_050--Hb_004643_020 Hb_000311_110 Hb_000311_110 Hb_001999_050--Hb_000311_110 Hb_018105_010 Hb_018105_010 Hb_001999_050--Hb_018105_010 Hb_001999_050--Hb_001205_170 Hb_119832_010 Hb_119832_010 Hb_001999_050--Hb_119832_010 Hb_000039_120 Hb_000039_120 Hb_001999_050--Hb_000039_120 Hb_171900_110 Hb_171900_110 Hb_001999_050--Hb_171900_110 Hb_004242_120 Hb_004242_120 Hb_002030_050--Hb_004242_120 Hb_000574_320 Hb_000574_320 Hb_002030_050--Hb_000574_320 Hb_011472_050 Hb_011472_050 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_003687_160 Hb_003687_160 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.595285 14.0506 0.821484 2.67719 1.16079 0.918389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.817514 23.2047

CAGE analysis