Hb_042463_060

Information

Type -
Description -
Location Contig42463: 32489-33018
Sequence    

Annotation

kegg
ID rcu:RCOM_2145570
description hypothetical protein
nr
ID XP_002535311.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAP2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2145570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41997: 31108-34991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005155_010 0.1353000491 - - amino acid transporter, putative [Ricinus communis]
3 Hb_004505_030 0.1354787075 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
4 Hb_002110_110 0.1412070206 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
5 Hb_004605_020 0.1523796302 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
6 Hb_003517_090 0.155445013 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
7 Hb_000032_020 0.1588372007 - - Centromeric protein E, putative [Ricinus communis]
8 Hb_005542_010 0.1596629571 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
9 Hb_000103_410 0.160295642 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
10 Hb_002609_130 0.1603661541 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
11 Hb_083242_020 0.1616864413 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
12 Hb_000816_160 0.1634572261 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
13 Hb_000363_050 0.16826026 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
14 Hb_011472_050 0.1687618774 - - -
15 Hb_000165_100 0.1706384098 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
16 Hb_027337_030 0.172695649 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
17 Hb_000321_120 0.1731153371 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
18 Hb_010261_030 0.173713922 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_003007_030 0.1737401718 - - -
20 Hb_001405_230 0.1757339403 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_042463_060 Hb_042463_060 Hb_005155_010 Hb_005155_010 Hb_042463_060--Hb_005155_010 Hb_004505_030 Hb_004505_030 Hb_042463_060--Hb_004505_030 Hb_002110_110 Hb_002110_110 Hb_042463_060--Hb_002110_110 Hb_004605_020 Hb_004605_020 Hb_042463_060--Hb_004605_020 Hb_003517_090 Hb_003517_090 Hb_042463_060--Hb_003517_090 Hb_000032_020 Hb_000032_020 Hb_042463_060--Hb_000032_020 Hb_061908_020 Hb_061908_020 Hb_005155_010--Hb_061908_020 Hb_002609_130 Hb_002609_130 Hb_005155_010--Hb_002609_130 Hb_005155_010--Hb_004605_020 Hb_000321_120 Hb_000321_120 Hb_005155_010--Hb_000321_120 Hb_010261_030 Hb_010261_030 Hb_005155_010--Hb_010261_030 Hb_004505_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_004505_030--Hb_010921_020 Hb_048476_070 Hb_048476_070 Hb_004505_030--Hb_048476_070 Hb_004505_030--Hb_010261_030 Hb_004505_030--Hb_002609_130 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_000237_160 Hb_000237_160 Hb_003517_090--Hb_000237_160 Hb_000363_050 Hb_000363_050 Hb_003517_090--Hb_000363_050 Hb_083242_020 Hb_083242_020 Hb_003517_090--Hb_083242_020 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_003517_090--Hb_011472_050 Hb_003517_090--Hb_004605_020 Hb_000032_020--Hb_000879_030 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_000032_020--Hb_005542_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5539 23.3579 6.64307 7.58038 2.38514 1.26697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.73829 8.70979 27.0241

CAGE analysis