Hb_042553_010

Information

Type -
Description -
Location Contig42553: 806-1301
Sequence    

Annotation

kegg
ID rcu:RCOM_1686430
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_012086927.1
description PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
swissprot
ID Q9ZRT5
description Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1
trembl
ID A0A067JZK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20606 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutathione s-transferase t1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42024: 572-1304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042553_010 0.0 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
2 Hb_007137_030 0.1383438801 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
3 Hb_001248_110 0.1531139023 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_001608_030 0.1554051108 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
5 Hb_116635_010 0.1593959103 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_006911_060 0.1679346891 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
7 Hb_183539_010 0.1686367649 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
8 Hb_056012_010 0.1693258766 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_093177_010 0.1749629364 - - Phosphoprotein phosphatase [Theobroma cacao]
10 Hb_000544_020 0.1753361796 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
11 Hb_007259_020 0.1758980064 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
12 Hb_102100_010 0.1787367707 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000532_130 0.1793453109 - - hypothetical protein [Anabaena sp. PCC 7108]
14 Hb_000699_190 0.1805766495 - - unknown [Populus trichocarpa]
15 Hb_158696_010 0.1814130617 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
16 Hb_138575_010 0.1818509853 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_001504_270 0.1850139576 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
18 Hb_162074_010 0.1853059052 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_007951_120 0.1884648542 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
20 Hb_003525_020 0.1917977872 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_042553_010 Hb_042553_010 Hb_007137_030 Hb_007137_030 Hb_042553_010--Hb_007137_030 Hb_001248_110 Hb_001248_110 Hb_042553_010--Hb_001248_110 Hb_001608_030 Hb_001608_030 Hb_042553_010--Hb_001608_030 Hb_116635_010 Hb_116635_010 Hb_042553_010--Hb_116635_010 Hb_006911_060 Hb_006911_060 Hb_042553_010--Hb_006911_060 Hb_183539_010 Hb_183539_010 Hb_042553_010--Hb_183539_010 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_004466_070 Hb_004466_070 Hb_001248_110--Hb_004466_070 Hb_000544_020 Hb_000544_020 Hb_001248_110--Hb_000544_020 Hb_000566_190 Hb_000566_190 Hb_001248_110--Hb_000566_190 Hb_001248_110--Hb_001608_030 Hb_158696_010 Hb_158696_010 Hb_001248_110--Hb_158696_010 Hb_001608_030--Hb_093177_010 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_138575_010 Hb_138575_010 Hb_116635_010--Hb_138575_010 Hb_003893_020 Hb_003893_020 Hb_116635_010--Hb_003893_020 Hb_116635_010--Hb_006911_060 Hb_000940_020 Hb_000940_020 Hb_116635_010--Hb_000940_020 Hb_012702_010 Hb_012702_010 Hb_116635_010--Hb_012702_010 Hb_001504_270 Hb_001504_270 Hb_006911_060--Hb_001504_270 Hb_000397_090 Hb_000397_090 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_006911_060--Hb_183539_010 Hb_017434_020 Hb_017434_020 Hb_183539_010--Hb_017434_020 Hb_000506_140 Hb_000506_140 Hb_183539_010--Hb_000506_140 Hb_000087_180 Hb_000087_180 Hb_183539_010--Hb_000087_180 Hb_000506_130 Hb_000506_130 Hb_183539_010--Hb_000506_130 Hb_001529_020 Hb_001529_020 Hb_183539_010--Hb_001529_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.9734 975.792 113.963 263.973 39.3093 114.165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56201 0.478381 0 153.676 48.7426

CAGE analysis