Hb_042664_010

Information

Type -
Description -
Location Contig42664: 3-455
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07640g
description hypothetical protein
nr
ID XP_006368675.1
description hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
swissprot
ID Q8RY17
description Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1
trembl
ID U5GSW7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s07640g PE=4 SV=1
Gene Ontology
ID GO:0005488
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042664_010 0.0 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
2 Hb_006196_020 0.0557088182 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
3 Hb_001901_090 0.0610947664 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_002615_050 0.0693876249 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_039342_030 0.0709252439 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002534_080 0.0736929201 - - zinc finger protein, putative [Ricinus communis]
7 Hb_008705_070 0.0781597651 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
8 Hb_016172_010 0.0794667265 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
9 Hb_004564_010 0.0842724832 - - receptor-kinase, putative [Ricinus communis]
10 Hb_005464_040 0.0847171238 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000025_250 0.0856147947 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
12 Hb_003891_060 0.0892446502 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
13 Hb_000160_230 0.0933840724 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_003253_020 0.0938657844 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
15 Hb_007810_140 0.0951238564 - - Ankyrin repeat-containing protein [Medicago truncatula]
16 Hb_000503_040 0.0952271574 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_039655_010 0.1010212479 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
18 Hb_018709_010 0.102294691 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_178389_020 0.1026150384 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
20 Hb_004254_070 0.102623238 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]

Gene co-expression network

sample Hb_042664_010 Hb_042664_010 Hb_006196_020 Hb_006196_020 Hb_042664_010--Hb_006196_020 Hb_001901_090 Hb_001901_090 Hb_042664_010--Hb_001901_090 Hb_002615_050 Hb_002615_050 Hb_042664_010--Hb_002615_050 Hb_039342_030 Hb_039342_030 Hb_042664_010--Hb_039342_030 Hb_002534_080 Hb_002534_080 Hb_042664_010--Hb_002534_080 Hb_008705_070 Hb_008705_070 Hb_042664_010--Hb_008705_070 Hb_000160_230 Hb_000160_230 Hb_006196_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_006196_020--Hb_007810_140 Hb_006196_020--Hb_002615_050 Hb_006196_020--Hb_039342_030 Hb_000859_040 Hb_000859_040 Hb_006196_020--Hb_000859_040 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_003253_020 Hb_003253_020 Hb_001901_090--Hb_003253_020 Hb_000513_110 Hb_000513_110 Hb_001901_090--Hb_000513_110 Hb_005464_040 Hb_005464_040 Hb_001901_090--Hb_005464_040 Hb_003891_060 Hb_003891_060 Hb_001901_090--Hb_003891_060 Hb_002615_050--Hb_007810_140 Hb_002615_050--Hb_000160_230 Hb_011824_010 Hb_011824_010 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_039342_030--Hb_008705_070 Hb_039342_030--Hb_002615_050 Hb_039342_030--Hb_000160_230 Hb_002534_080--Hb_005464_040 Hb_027402_120 Hb_027402_120 Hb_002534_080--Hb_027402_120 Hb_000025_250 Hb_000025_250 Hb_002534_080--Hb_000025_250 Hb_002534_080--Hb_001901_090 Hb_002534_080--Hb_002615_050 Hb_001328_110 Hb_001328_110 Hb_008705_070--Hb_001328_110 Hb_025526_090 Hb_025526_090 Hb_008705_070--Hb_025526_090 Hb_003052_070 Hb_003052_070 Hb_008705_070--Hb_003052_070 Hb_008705_070--Hb_016172_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.702688 0.212854 0.186527 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.22133 0

CAGE analysis