Hb_042666_010

Information

Type -
Description -
Location Contig42666: 402-936
Sequence    

Annotation

kegg
ID rcu:RCOM_0611180
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002522034.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID B9S7R5
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_0611180 PE=4 SV=1
Gene Ontology
ID GO:0003824
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042666_010 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_000940_090 0.007905668 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
3 Hb_000156_020 0.0097553174 - - PREDICTED: la-related protein 6A [Jatropha curcas]
4 Hb_003176_030 0.0097553174 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
5 Hb_001587_130 0.0108233301 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_000319_100 0.0111574597 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
7 Hb_082864_010 0.0118834028 - - JHL25H03.10 [Jatropha curcas]
8 Hb_000166_010 0.012136178 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_001544_010 0.0170654061 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000283_170 0.0195449274 - - ATP binding protein, putative [Ricinus communis]
11 Hb_008021_020 0.0198585748 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
12 Hb_007289_010 0.0200107338 - - cytochrome P450, putative [Ricinus communis]
13 Hb_091368_010 0.0252233791 - - gibberellin 20-oxidase, putative [Ricinus communis]
14 Hb_000856_220 0.0273110976 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
15 Hb_002793_010 0.0277310037 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
16 Hb_185830_040 0.0281776584 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
17 Hb_004000_030 0.0293433781 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_181803_010 0.0294171623 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_183433_020 0.0306244666 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
20 Hb_170365_010 0.0312255858 - - Retrotransposon protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_042666_010 Hb_042666_010 Hb_000940_090 Hb_000940_090 Hb_042666_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_042666_010--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_042666_010--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_042666_010--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_042666_010--Hb_000319_100 Hb_082864_010 Hb_082864_010 Hb_042666_010--Hb_082864_010 Hb_000940_090--Hb_000156_020 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_001587_130 Hb_000940_090--Hb_000319_100 Hb_000283_170 Hb_000283_170 Hb_000940_090--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_001587_130 Hb_000156_020--Hb_000319_100 Hb_000156_020--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_001587_130 Hb_000156_020--Hb_000319_100 Hb_000156_020--Hb_000283_170 Hb_001587_130--Hb_000319_100 Hb_001587_130--Hb_003176_030 Hb_001587_130--Hb_000283_170 Hb_008021_020 Hb_008021_020 Hb_001587_130--Hb_008021_020 Hb_000319_100--Hb_003176_030 Hb_000319_100--Hb_000283_170 Hb_000319_100--Hb_008021_020 Hb_000166_010 Hb_000166_010 Hb_082864_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_082864_010--Hb_001544_010 Hb_091368_010 Hb_091368_010 Hb_082864_010--Hb_091368_010 Hb_082864_010--Hb_000940_090 Hb_082864_010--Hb_000156_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 14.2818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.6902 0

CAGE analysis