Hb_042729_020

Information

Type -
Description -
Location Contig42729: 28399-37549
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15760g
description POPTRDRAFT_732333; PAZ domain-containing family protein
nr
ID XP_012080654.1
description PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
swissprot
ID Q6YSJ5
description Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2
trembl
ID A0A067K3M5
description Protein argonaute OS=Jatropha curcas GN=JCGZ_13759 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42068: 28339-28492 , PASA_asmbl_42070: 30146-30360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042729_020 0.0 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
2 Hb_003050_270 0.1028751513 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
3 Hb_004070_020 0.1155470481 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
4 Hb_001348_170 0.1182236075 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
5 Hb_003994_290 0.1227636147 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
6 Hb_000331_180 0.1235728175 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
7 Hb_004837_270 0.1244469579 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
8 Hb_000381_120 0.1254900512 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
9 Hb_003177_020 0.1285731432 - - diphthine synthase, putative [Ricinus communis]
10 Hb_032808_010 0.1292007306 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
11 Hb_000270_490 0.1292119687 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
12 Hb_000034_070 0.1299016067 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
13 Hb_063716_100 0.1307439909 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
14 Hb_000005_280 0.133987335 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
15 Hb_000329_060 0.1349069812 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
16 Hb_073973_100 0.1368482709 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
17 Hb_006569_030 0.1372119565 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
18 Hb_000468_060 0.1377471029 - - ku P70 DNA helicase, putative [Ricinus communis]
19 Hb_000351_120 0.1381605349 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
20 Hb_002205_090 0.13890441 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_042729_020 Hb_042729_020 Hb_003050_270 Hb_003050_270 Hb_042729_020--Hb_003050_270 Hb_004070_020 Hb_004070_020 Hb_042729_020--Hb_004070_020 Hb_001348_170 Hb_001348_170 Hb_042729_020--Hb_001348_170 Hb_003994_290 Hb_003994_290 Hb_042729_020--Hb_003994_290 Hb_000331_180 Hb_000331_180 Hb_042729_020--Hb_000331_180 Hb_004837_270 Hb_004837_270 Hb_042729_020--Hb_004837_270 Hb_000521_080 Hb_000521_080 Hb_003050_270--Hb_000521_080 Hb_000640_170 Hb_000640_170 Hb_003050_270--Hb_000640_170 Hb_001922_170 Hb_001922_170 Hb_003050_270--Hb_001922_170 Hb_000035_500 Hb_000035_500 Hb_003050_270--Hb_000035_500 Hb_073973_100 Hb_073973_100 Hb_003050_270--Hb_073973_100 Hb_000039_220 Hb_000039_220 Hb_004070_020--Hb_000039_220 Hb_000468_060 Hb_000468_060 Hb_004070_020--Hb_000468_060 Hb_000768_090 Hb_000768_090 Hb_004070_020--Hb_000768_090 Hb_008511_120 Hb_008511_120 Hb_004070_020--Hb_008511_120 Hb_032808_010 Hb_032808_010 Hb_004070_020--Hb_032808_010 Hb_000417_130 Hb_000417_130 Hb_004070_020--Hb_000417_130 Hb_001348_170--Hb_004837_270 Hb_001629_080 Hb_001629_080 Hb_001348_170--Hb_001629_080 Hb_002686_170 Hb_002686_170 Hb_001348_170--Hb_002686_170 Hb_000621_070 Hb_000621_070 Hb_001348_170--Hb_000621_070 Hb_001348_170--Hb_000035_500 Hb_001348_170--Hb_004070_020 Hb_003994_290--Hb_032808_010 Hb_002016_170 Hb_002016_170 Hb_003994_290--Hb_002016_170 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_003994_290--Hb_000521_080 Hb_000783_010 Hb_000783_010 Hb_000331_180--Hb_000783_010 Hb_000034_070 Hb_000034_070 Hb_000331_180--Hb_000034_070 Hb_000331_180--Hb_032808_010 Hb_001366_370 Hb_001366_370 Hb_000331_180--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_000331_180--Hb_000510_300 Hb_002445_060 Hb_002445_060 Hb_000331_180--Hb_002445_060 Hb_004837_270--Hb_002686_170 Hb_004837_270--Hb_001629_080 Hb_000110_310 Hb_000110_310 Hb_004837_270--Hb_000110_310 Hb_001799_030 Hb_001799_030 Hb_004837_270--Hb_001799_030 Hb_000731_160 Hb_000731_160 Hb_004837_270--Hb_000731_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8088 0.403038 1.87949 1.36009 0.915538 1.32837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85938 0.907406 1.04158 2.29429 0.677689

CAGE analysis