Hb_042778_010

Information

Type -
Description -
Location Contig42778: 419-1915
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042778_010 0.0 - - -
2 Hb_065182_010 0.2503340089 - - hypothetical protein JCGZ_20878 [Jatropha curcas]
3 Hb_000240_060 0.2651531796 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_062562_010 0.2854099272 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
5 Hb_000521_010 0.285465694 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
6 Hb_144451_010 0.2855454085 - - hypothetical protein VITISV_001808 [Vitis vinifera]
7 Hb_000510_020 0.2855569526 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
8 Hb_110559_010 0.2856294452 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
9 Hb_002893_160 0.2856931623 - - peptidase, putative [Ricinus communis]
10 Hb_010896_020 0.2856957901 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001357_070 0.2857235899 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
12 Hb_137133_010 0.3145192827 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_001243_010 0.3327173127 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
14 Hb_007336_030 0.3499203594 - - -
15 Hb_015322_040 0.3645186109 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
16 Hb_000230_320 0.3654746251 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
17 Hb_001534_010 0.3693507636 - - Alpha-expansin 3 precursor [Theobroma cacao]
18 Hb_000098_320 0.3818678157 - - -
19 Hb_007904_140 0.3833864057 - - -
20 Hb_140902_010 0.3858734565 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]

Gene co-expression network

sample Hb_042778_010 Hb_042778_010 Hb_065182_010 Hb_065182_010 Hb_042778_010--Hb_065182_010 Hb_000240_060 Hb_000240_060 Hb_042778_010--Hb_000240_060 Hb_062562_010 Hb_062562_010 Hb_042778_010--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_042778_010--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_042778_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_042778_010--Hb_000510_020 Hb_007336_030 Hb_007336_030 Hb_065182_010--Hb_007336_030 Hb_004934_080 Hb_004934_080 Hb_065182_010--Hb_004934_080 Hb_000802_120 Hb_000802_120 Hb_065182_010--Hb_000802_120 Hb_001387_030 Hb_001387_030 Hb_065182_010--Hb_001387_030 Hb_000363_440 Hb_000363_440 Hb_065182_010--Hb_000363_440 Hb_137133_010 Hb_137133_010 Hb_000240_060--Hb_137133_010 Hb_001357_070 Hb_001357_070 Hb_000240_060--Hb_001357_070 Hb_110559_010 Hb_110559_010 Hb_000240_060--Hb_110559_010 Hb_000240_060--Hb_062562_010 Hb_000240_060--Hb_000521_010 Hb_062562_010--Hb_000521_010 Hb_062562_010--Hb_144451_010 Hb_062562_010--Hb_000510_020 Hb_062562_010--Hb_110559_010 Hb_002893_160 Hb_002893_160 Hb_062562_010--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_062562_010--Hb_010896_020 Hb_000521_010--Hb_144451_010 Hb_000521_010--Hb_000510_020 Hb_000521_010--Hb_002893_160 Hb_000521_010--Hb_010896_020 Hb_000521_010--Hb_110559_010 Hb_144451_010--Hb_000510_020 Hb_144451_010--Hb_002893_160 Hb_144451_010--Hb_010896_020 Hb_144451_010--Hb_110559_010 Hb_000510_020--Hb_002893_160 Hb_000510_020--Hb_010896_020 Hb_000510_020--Hb_110559_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0309649 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0705277 0 0.0999972 0 0

CAGE analysis