Hb_043061_010

Information

Type -
Description -
Location Contig43061: 25654-28800
Sequence    

Annotation

kegg
ID rcu:RCOM_0669590
description Rho GDP-dissociation inhibitor, putative
nr
ID XP_002520560.1
description Rho GDP-dissociation inhibitor, putative [Ricinus communis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID B9S3J1
description Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0669590 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42199: 27208-28517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043061_010 0.0 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
2 Hb_115919_020 0.0980456936 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_001892_150 0.1000313727 - - -
4 Hb_000284_010 0.1212009293 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_000444_030 0.121950068 - - PREDICTED: expansin-A20 [Jatropha curcas]
6 Hb_134789_010 0.1242885314 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_000184_180 0.1285956735 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
8 Hb_029879_080 0.1290653996 - - unknown [Populus trichocarpa]
9 Hb_000078_030 0.1339883095 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012305_060 0.1347422147 - - protein translocase, putative [Ricinus communis]
11 Hb_001741_080 0.141627689 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
12 Hb_005016_130 0.1440990417 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_005450_010 0.1442371378 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_007317_220 0.147774045 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
15 Hb_007747_130 0.1494543923 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
16 Hb_010578_090 0.1501918967 - - HEV2.1 [Hevea brasiliensis]
17 Hb_000193_230 0.1501948798 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_001279_250 0.1544878304 - - PREDICTED: pectate lyase-like [Jatropha curcas]
19 Hb_000787_070 0.1571141434 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
20 Hb_002221_080 0.1581459732 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]

Gene co-expression network

sample Hb_043061_010 Hb_043061_010 Hb_115919_020 Hb_115919_020 Hb_043061_010--Hb_115919_020 Hb_001892_150 Hb_001892_150 Hb_043061_010--Hb_001892_150 Hb_000284_010 Hb_000284_010 Hb_043061_010--Hb_000284_010 Hb_000444_030 Hb_000444_030 Hb_043061_010--Hb_000444_030 Hb_134789_010 Hb_134789_010 Hb_043061_010--Hb_134789_010 Hb_000184_180 Hb_000184_180 Hb_043061_010--Hb_000184_180 Hb_115919_020--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_115919_020--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_115919_020--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_005450_010 Hb_005450_010 Hb_001892_150--Hb_005450_010 Hb_029879_080 Hb_029879_080 Hb_001892_150--Hb_029879_080 Hb_003327_060 Hb_003327_060 Hb_001892_150--Hb_003327_060 Hb_001892_150--Hb_115919_020 Hb_001892_150--Hb_134789_010 Hb_000284_010--Hb_000078_030 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_002298_040 Hb_000284_010--Hb_000193_230 Hb_001741_080 Hb_001741_080 Hb_000444_030--Hb_001741_080 Hb_000444_030--Hb_000184_180 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_006816_440 Hb_006816_440 Hb_000444_030--Hb_006816_440 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030 Hb_000184_180--Hb_006816_440 Hb_000052_010 Hb_000052_010 Hb_000184_180--Hb_000052_010 Hb_000184_180--Hb_001741_080 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.2551 1.59544 0.62046 2.18877 70.5714 166.028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
193.466 150.201 68.9334 2.15929 0.315074

CAGE analysis