Hb_043295_010

Information

Type -
Description -
Location Contig43295: 5915-7545
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043295_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_007245_010 0.0001010675 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
3 Hb_000964_160 0.0035346496 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
4 Hb_002545_030 0.0449483237 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000441_010 0.0498757895 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_014720_060 0.0506000481 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
7 Hb_131101_010 0.0658940883 - - -
8 Hb_001761_110 0.0702656862 - - Contains similarity to Cf-2.2 gene gb
9 Hb_174245_020 0.1323138197 - - -
10 Hb_001959_230 0.1527531358 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
11 Hb_113444_010 0.1618948074 - - -
12 Hb_000274_030 0.1687145283 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_000429_060 0.1798276368 - - conserved hypothetical protein [Ricinus communis]
14 Hb_069877_010 0.1969871585 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_003266_120 0.2010725069 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
16 Hb_135811_030 0.2015675701 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_021409_130 0.2714518286 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
18 Hb_001248_040 0.2747203907 - - -
19 Hb_010174_050 0.2810491923 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_086922_010 0.2821214487 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]

Gene co-expression network

sample Hb_043295_010 Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_043295_010--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_043295_010--Hb_000964_160 Hb_002545_030 Hb_002545_030 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010 Hb_002545_030--Hb_000441_010 Hb_002545_030--Hb_014720_060 Hb_002545_030--Hb_131101_010 Hb_001761_110 Hb_001761_110 Hb_002545_030--Hb_001761_110 Hb_000441_010--Hb_014720_060 Hb_000441_010--Hb_131101_010 Hb_000441_010--Hb_001761_110 Hb_014720_060--Hb_131101_010 Hb_014720_060--Hb_001761_110 Hb_131101_010--Hb_001761_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0168619 0 0.0100928 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis