Hb_043623_020

Information

Type -
Description -
Location Contig43623: 14376-14934
Sequence    

Annotation

kegg
ID tcc:TCM_030004
description hypothetical protein
nr
ID KDP26534.1
description hypothetical protein JCGZ_17692 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17692 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043623_020 0.0 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
2 Hb_001143_260 0.0839114657 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
3 Hb_001221_280 0.1534331645 - - -
4 Hb_000876_040 0.1871371915 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
5 Hb_002513_050 0.2268280112 - - hypothetical protein F383_14794 [Gossypium arboreum]
6 Hb_009615_080 0.2733063028 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
7 Hb_000184_200 0.2775530385 - - -
8 Hb_135008_010 0.2902501573 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_003799_020 0.2935763526 - - hypothetical protein VITISV_003261 [Vitis vinifera]
10 Hb_001342_050 0.3133018813 - - -
11 Hb_000010_100 0.3155173887 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
12 Hb_168311_010 0.324781984 - - -
13 Hb_000139_440 0.326347058 - - unnamed protein product [Coffea canephora]
14 Hb_125847_010 0.3271167476 - - -
15 Hb_000590_020 0.3275860177 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
16 Hb_047040_010 0.3282137223 - - integrase [Gossypium herbaceum]
17 Hb_026048_060 0.328902539 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_000430_010 0.3293738443 - - -
19 Hb_022206_060 0.3294783301 - - -
20 Hb_000392_290 0.3297629429 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_043623_020 Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_043623_020--Hb_001143_260 Hb_001221_280 Hb_001221_280 Hb_043623_020--Hb_001221_280 Hb_000876_040 Hb_000876_040 Hb_043623_020--Hb_000876_040 Hb_002513_050 Hb_002513_050 Hb_043623_020--Hb_002513_050 Hb_009615_080 Hb_009615_080 Hb_043623_020--Hb_009615_080 Hb_000184_200 Hb_000184_200 Hb_043623_020--Hb_000184_200 Hb_001143_260--Hb_002513_050 Hb_001143_260--Hb_000876_040 Hb_001143_260--Hb_001221_280 Hb_001143_260--Hb_000184_200 Hb_001143_260--Hb_009615_080 Hb_003799_020 Hb_003799_020 Hb_001221_280--Hb_003799_020 Hb_098785_010 Hb_098785_010 Hb_001221_280--Hb_098785_010 Hb_006569_070 Hb_006569_070 Hb_001221_280--Hb_006569_070 Hb_000856_160 Hb_000856_160 Hb_001221_280--Hb_000856_160 Hb_000876_040--Hb_002513_050 Hb_168311_010 Hb_168311_010 Hb_000876_040--Hb_168311_010 Hb_125847_010 Hb_125847_010 Hb_000876_040--Hb_125847_010 Hb_000139_440 Hb_000139_440 Hb_000876_040--Hb_000139_440 Hb_000430_010 Hb_000430_010 Hb_000876_040--Hb_000430_010 Hb_002513_050--Hb_000184_200 Hb_004785_010 Hb_004785_010 Hb_002513_050--Hb_004785_010 Hb_000174_190 Hb_000174_190 Hb_002513_050--Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_002513_050--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_002513_050--Hb_083493_050 Hb_025311_020 Hb_025311_020 Hb_009615_080--Hb_025311_020 Hb_009615_080--Hb_000876_040 Hb_007125_010 Hb_007125_010 Hb_009615_080--Hb_007125_010 Hb_012424_010 Hb_012424_010 Hb_009615_080--Hb_012424_010 Hb_187513_010 Hb_187513_010 Hb_009615_080--Hb_187513_010 Hb_009615_080--Hb_002513_050 Hb_000201_020 Hb_000201_020 Hb_000184_200--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_000184_200--Hb_000971_060 Hb_001545_250 Hb_001545_250 Hb_000184_200--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000184_200--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000184_200--Hb_010760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.144405 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.446311 0.148503 0

CAGE analysis