Hb_043630_030

Information

Type -
Description -
Location Contig43630: 28302-31520
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14960g
description POPTRDRAFT_574486; leucine-rich repeat transmembrane protein kinase
nr
ID XP_002325645.2
description leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9INM7
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0019s14960g PE=4 SV=2
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42471: 28213-28901 , PASA_asmbl_42473: 30660-30960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043630_030 0.0 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_122951_010 0.0615158875 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
3 Hb_017862_030 0.0686391535 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
4 Hb_001427_100 0.0895878893 - - acc synthase, putative [Ricinus communis]
5 Hb_000020_210 0.1012829311 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
6 Hb_003054_070 0.1031192554 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
7 Hb_007221_040 0.1056830794 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
8 Hb_021576_130 0.1065037097 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
9 Hb_005111_020 0.1078433585 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
10 Hb_000742_130 0.1087660219 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
11 Hb_001794_040 0.1100833099 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
12 Hb_010164_030 0.1103270766 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_002518_220 0.1105398445 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
14 Hb_000849_030 0.1106870282 - - PREDICTED: fimbrin-2 [Jatropha curcas]
15 Hb_092975_010 0.1114850546 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
16 Hb_002205_150 0.11289551 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
17 Hb_000012_350 0.1133632942 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
18 Hb_039946_060 0.1136439402 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
19 Hb_002151_020 0.1158022769 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
20 Hb_000005_360 0.1168410745 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_043630_030 Hb_043630_030 Hb_122951_010 Hb_122951_010 Hb_043630_030--Hb_122951_010 Hb_017862_030 Hb_017862_030 Hb_043630_030--Hb_017862_030 Hb_001427_100 Hb_001427_100 Hb_043630_030--Hb_001427_100 Hb_000020_210 Hb_000020_210 Hb_043630_030--Hb_000020_210 Hb_003054_070 Hb_003054_070 Hb_043630_030--Hb_003054_070 Hb_007221_040 Hb_007221_040 Hb_043630_030--Hb_007221_040 Hb_122951_010--Hb_017862_030 Hb_002522_040 Hb_002522_040 Hb_122951_010--Hb_002522_040 Hb_005111_020 Hb_005111_020 Hb_122951_010--Hb_005111_020 Hb_000849_030 Hb_000849_030 Hb_122951_010--Hb_000849_030 Hb_122951_010--Hb_000020_210 Hb_000045_080 Hb_000045_080 Hb_017862_030--Hb_000045_080 Hb_008598_010 Hb_008598_010 Hb_017862_030--Hb_008598_010 Hb_002151_020 Hb_002151_020 Hb_017862_030--Hb_002151_020 Hb_026144_040 Hb_026144_040 Hb_017862_030--Hb_026144_040 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_001427_100--Hb_005111_020 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_001427_100--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_009222_040 Hb_009222_040 Hb_000020_210--Hb_009222_040 Hb_000020_210--Hb_005111_020 Hb_001405_170 Hb_001405_170 Hb_000020_210--Hb_001405_170 Hb_000020_210--Hb_039946_060 Hb_003054_070--Hb_010164_030 Hb_001117_050 Hb_001117_050 Hb_003054_070--Hb_001117_050 Hb_003054_070--Hb_000012_350 Hb_008221_200 Hb_008221_200 Hb_003054_070--Hb_008221_200 Hb_003054_070--Hb_001427_100 Hb_147006_010 Hb_147006_010 Hb_003054_070--Hb_147006_010 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_003454_050 Hb_003454_050 Hb_007221_040--Hb_003454_050 Hb_000434_060 Hb_000434_060 Hb_007221_040--Hb_000434_060 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.279274 0.42579 0.879526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.087023 0.344846

CAGE analysis