Hb_043637_010

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig43637: 3-410
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05220g
description hypothetical protein
nr
ID XP_006374228.1
description hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
swissprot
ID Q9SB61
description Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1
trembl
ID U5FLX4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s05220g PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42474: 438-651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043637_010 0.0 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
2 Hb_170116_010 0.0923891056 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
3 Hb_003507_020 0.0939258534 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_007810_040 0.0982867964 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
5 Hb_000603_200 0.1037216521 - - PREDICTED: myosin-15 [Jatropha curcas]
6 Hb_003304_080 0.1067603472 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
7 Hb_001628_110 0.111831831 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
8 Hb_000329_620 0.1134584552 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
9 Hb_053262_010 0.1141506201 - - -
10 Hb_007178_010 0.1149297249 - - pseudo-hevein [Hevea brasiliensis]
11 Hb_095397_010 0.1218929153 - - hypothetical protein 25 [Hevea brasiliensis]
12 Hb_001635_220 0.12392515 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_002232_180 0.1250922785 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
14 Hb_007158_030 0.1261451605 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001252_160 0.126646718 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
16 Hb_000483_370 0.1291159959 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002627_060 0.1293807492 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
18 Hb_002989_080 0.1303876445 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
19 Hb_000050_120 0.1321865398 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
20 Hb_002172_030 0.1329533299 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_043637_010 Hb_043637_010 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_003507_020 Hb_003507_020 Hb_043637_010--Hb_003507_020 Hb_007810_040 Hb_007810_040 Hb_043637_010--Hb_007810_040 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_003304_080 Hb_003304_080 Hb_043637_010--Hb_003304_080 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_001454_390 Hb_001454_390 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003627_020 Hb_003627_020 Hb_003507_020--Hb_003627_020 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_003507_020--Hb_007810_040 Hb_007810_040--Hb_003304_080 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_007810_040--Hb_095397_010 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_000603_200--Hb_007178_010 Hb_000050_120 Hb_000050_120 Hb_003304_080--Hb_000050_120 Hb_003304_080--Hb_002078_040 Hb_003304_080--Hb_095397_010 Hb_012654_020 Hb_012654_020 Hb_003304_080--Hb_012654_020 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_001628_110--Hb_003507_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
566.946 4.41249 6.25223 14.4249 530.015 427.378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.647 184.944 150.719 13.8985 2.40001

CAGE analysis