Hb_043655_010

Information

Type -
Description -
Location Contig43655: 2319-3785
Sequence    

Annotation

kegg
ID tcc:TCM_028769
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_012081576.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067KDD8
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_18439 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043655_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
2 Hb_001691_050 0.1798904351 - - -
3 Hb_000836_050 0.1883170511 - - -
4 Hb_002232_290 0.1994717063 - - -
5 Hb_002026_230 0.2064457953 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
6 Hb_000590_080 0.2083282861 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
7 Hb_029510_010 0.2172021687 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
8 Hb_002493_030 0.217208541 - - -
9 Hb_030414_050 0.2261492321 - - -
10 Hb_004007_150 0.2281303029 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
11 Hb_003534_040 0.2316475938 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
12 Hb_002609_100 0.2384201674 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
13 Hb_000018_160 0.2394468827 - - nitrate transporter, putative [Ricinus communis]
14 Hb_073212_010 0.2405931431 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
15 Hb_000140_150 0.2421038097 - - -
16 Hb_138600_010 0.242956292 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
17 Hb_000101_210 0.2431929838 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
18 Hb_031862_170 0.2439812816 - - immunophilin, putative [Ricinus communis]
19 Hb_031073_010 0.2444398595 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
20 Hb_171108_010 0.2452378134 - - -

Gene co-expression network

sample Hb_043655_010 Hb_043655_010 Hb_001691_050 Hb_001691_050 Hb_043655_010--Hb_001691_050 Hb_000836_050 Hb_000836_050 Hb_043655_010--Hb_000836_050 Hb_002232_290 Hb_002232_290 Hb_043655_010--Hb_002232_290 Hb_002026_230 Hb_002026_230 Hb_043655_010--Hb_002026_230 Hb_000590_080 Hb_000590_080 Hb_043655_010--Hb_000590_080 Hb_029510_010 Hb_029510_010 Hb_043655_010--Hb_029510_010 Hb_073212_010 Hb_073212_010 Hb_001691_050--Hb_073212_010 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_088542_010 Hb_088542_010 Hb_001691_050--Hb_088542_010 Hb_007634_020 Hb_007634_020 Hb_001691_050--Hb_007634_020 Hb_001691_050--Hb_002232_290 Hb_000836_050--Hb_002026_230 Hb_030414_050 Hb_030414_050 Hb_000836_050--Hb_030414_050 Hb_002609_100 Hb_002609_100 Hb_000836_050--Hb_002609_100 Hb_012150_070 Hb_012150_070 Hb_000836_050--Hb_012150_070 Hb_002897_040 Hb_002897_040 Hb_000836_050--Hb_002897_040 Hb_138600_010 Hb_138600_010 Hb_002232_290--Hb_138600_010 Hb_031862_170 Hb_031862_170 Hb_002232_290--Hb_031862_170 Hb_005568_070 Hb_005568_070 Hb_002232_290--Hb_005568_070 Hb_008147_030 Hb_008147_030 Hb_002232_290--Hb_008147_030 Hb_002232_290--Hb_029510_010 Hb_002026_230--Hb_012150_070 Hb_002026_230--Hb_002609_100 Hb_002026_230--Hb_007634_020 Hb_002026_230--Hb_005568_070 Hb_000018_160 Hb_000018_160 Hb_002026_230--Hb_000018_160 Hb_003050_090 Hb_003050_090 Hb_000590_080--Hb_003050_090 Hb_060437_010 Hb_060437_010 Hb_000590_080--Hb_060437_010 Hb_000590_080--Hb_031862_170 Hb_004931_040 Hb_004931_040 Hb_000590_080--Hb_004931_040 Hb_001034_020 Hb_001034_020 Hb_000590_080--Hb_001034_020 Hb_000101_210 Hb_000101_210 Hb_000590_080--Hb_000101_210 Hb_029510_010--Hb_138600_010 Hb_029510_010--Hb_000101_210 Hb_029510_010--Hb_088542_010 Hb_029510_010--Hb_000590_080 Hb_029510_010--Hb_031862_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92745 1.17808 0.139473 0 4.54906 1.19579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.084864 0 0.681648 0.347878 0

CAGE analysis