Hb_043708_010

Information

Type -
Description -
Location Contig43708: 2-784
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID GO:0043170
description ac091247_1 5 - partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043708_010 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_004650_060 0.1671144854 - - putative retrotransposon protein [Phyllostachys edulis]
3 Hb_019656_010 0.1818173184 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_131102_010 0.2120793664 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_002791_020 0.2216077134 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
6 Hb_000154_010 0.2353219639 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_008730_010 0.2355436147 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_003005_040 0.2418047238 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000159_020 0.2435435909 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
10 Hb_003523_040 0.2461021362 - - F15O4.13 [Arabidopsis thaliana]
11 Hb_002534_030 0.2494532212 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_001229_020 0.2583301146 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_006132_030 0.2616480406 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
14 Hb_133820_010 0.2646933039 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_000460_070 0.2652503411 - - luminal binding protein [Gossypium hirsutum]
16 Hb_008698_010 0.2678584273 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_007054_050 0.2691212811 - - -
18 Hb_005588_110 0.2708908396 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
19 Hb_170156_010 0.2757122912 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_171685_030 0.2757479733 - - URF-1 [Citrullus lanatus]

Gene co-expression network

sample Hb_043708_010 Hb_043708_010 Hb_004650_060 Hb_004650_060 Hb_043708_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_000154_010 Hb_000154_010 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_019656_010--Hb_131102_010 Hb_001172_090 Hb_001172_090 Hb_019656_010--Hb_001172_090 Hb_019656_010--Hb_004650_060 Hb_000258_340 Hb_000258_340 Hb_019656_010--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_019656_010--Hb_010977_010 Hb_133820_010 Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_131102_010--Hb_004650_060 Hb_008803_040 Hb_008803_040 Hb_002791_020--Hb_008803_040 Hb_170156_010 Hb_170156_010 Hb_002791_020--Hb_170156_010 Hb_001188_120 Hb_001188_120 Hb_002791_020--Hb_001188_120 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_002791_020--Hb_004650_060 Hb_000154_010--Hb_133820_010 Hb_006132_030 Hb_006132_030 Hb_000154_010--Hb_006132_030 Hb_000160_320 Hb_000160_320 Hb_000154_010--Hb_000160_320 Hb_036988_010 Hb_036988_010 Hb_000154_010--Hb_036988_010 Hb_000101_150 Hb_000101_150 Hb_008730_010--Hb_000101_150 Hb_002599_040 Hb_002599_040 Hb_008730_010--Hb_002599_040 Hb_076795_010 Hb_076795_010 Hb_008730_010--Hb_076795_010 Hb_106815_010 Hb_106815_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204273 0.192681 0.0936386 0.0256417 0.0605956 0.338709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.277778 0.491421 1.7743 0.199059 4.156

CAGE analysis