Hb_043789_010

Information

Type transcription factor
Description TF Family: AP2
Location Contig43789: 20-1331
Sequence    

Annotation

kegg
ID rcu:RCOM_0366280
description hypothetical protein
nr
ID CAN60401.1
description hypothetical protein VITISV_034131 [Vitis vinifera]
swissprot
ID Q38914
description AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
trembl
ID A5AMI6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034131 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043789_010 0.0 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
2 Hb_139461_010 0.0980334531 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_002811_110 0.1053991988 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
4 Hb_008021_040 0.1057445489 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
5 Hb_004659_100 0.1066882694 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000571_060 0.1085931157 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
7 Hb_001048_070 0.1151994622 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
8 Hb_002236_010 0.121419467 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
9 Hb_000181_260 0.1236368003 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
10 Hb_009838_120 0.1251564292 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_024868_010 0.1272565956 - - protein kinase, putative [Ricinus communis]
12 Hb_007625_030 0.131396723 - - unknown [Medicago truncatula]
13 Hb_005679_120 0.13355833 - - hypothetical protein RCOM_0284080 [Ricinus communis]
14 Hb_002897_030 0.1346762975 - - PREDICTED: methylesterase 17 [Jatropha curcas]
15 Hb_008725_020 0.1356470352 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
16 Hb_006153_130 0.1393211678 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_002641_140 0.1416013117 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_033053_020 0.1423252743 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
19 Hb_002553_070 0.1437008385 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
20 Hb_009627_020 0.1441965266 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]

Gene co-expression network

sample Hb_043789_010 Hb_043789_010 Hb_139461_010 Hb_139461_010 Hb_043789_010--Hb_139461_010 Hb_002811_110 Hb_002811_110 Hb_043789_010--Hb_002811_110 Hb_008021_040 Hb_008021_040 Hb_043789_010--Hb_008021_040 Hb_004659_100 Hb_004659_100 Hb_043789_010--Hb_004659_100 Hb_000571_060 Hb_000571_060 Hb_043789_010--Hb_000571_060 Hb_001048_070 Hb_001048_070 Hb_043789_010--Hb_001048_070 Hb_139461_010--Hb_008021_040 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_139461_010--Hb_001048_070 Hb_002811_110--Hb_000571_060 Hb_002811_110--Hb_000181_260 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_000162_070 Hb_000162_070 Hb_002811_110--Hb_000162_070 Hb_007237_080 Hb_007237_080 Hb_002811_110--Hb_007237_080 Hb_002811_110--Hb_008021_040 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_009627_020 Hb_009627_020 Hb_004659_100--Hb_009627_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_004659_100--Hb_009838_120 Hb_002236_010 Hb_002236_010 Hb_000571_060--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_000571_060--Hb_002553_070 Hb_000571_060--Hb_000181_260 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_012787_060 Hb_012787_060 Hb_001048_070--Hb_012787_060 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.49528 1.89575 6.28036 0.08202 0.224334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.31642 1.06667

CAGE analysis