Hb_043792_010

Information

Type -
Description -
Location Contig43792: 10342-14060
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03030g
description POPTRDRAFT_422332; hypothetical protein
nr
ID XP_012086016.1
description PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K326
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22852 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42549: 10366-11944 , PASA_asmbl_42550: 12062-30793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043792_010 0.0 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
2 Hb_000959_230 0.069047469 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
3 Hb_002909_040 0.0715368593 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
4 Hb_002716_060 0.0733778287 - - carboxylesterase np, putative [Ricinus communis]
5 Hb_000089_210 0.0748464213 - - unknown [Medicago truncatula]
6 Hb_001761_120 0.0757634551 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
7 Hb_002326_040 0.0798560841 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
8 Hb_000130_420 0.080913574 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_001804_110 0.0812317311 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
10 Hb_001723_150 0.082414663 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_002326_110 0.0831123065 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
12 Hb_000169_080 0.0846120022 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
13 Hb_000359_040 0.0858795319 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001579_330 0.0867295051 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
15 Hb_000085_170 0.0872957617 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
16 Hb_000144_070 0.0874062165 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001025_120 0.0882693358 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
18 Hb_018790_020 0.0885029292 - - protein kinase, putative [Ricinus communis]
19 Hb_000352_350 0.088574301 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
20 Hb_004109_320 0.0899131323 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]

Gene co-expression network

sample Hb_043792_010 Hb_043792_010 Hb_000959_230 Hb_000959_230 Hb_043792_010--Hb_000959_230 Hb_002909_040 Hb_002909_040 Hb_043792_010--Hb_002909_040 Hb_002716_060 Hb_002716_060 Hb_043792_010--Hb_002716_060 Hb_000089_210 Hb_000089_210 Hb_043792_010--Hb_000089_210 Hb_001761_120 Hb_001761_120 Hb_043792_010--Hb_001761_120 Hb_002326_040 Hb_002326_040 Hb_043792_010--Hb_002326_040 Hb_001804_110 Hb_001804_110 Hb_000959_230--Hb_001804_110 Hb_002054_050 Hb_002054_050 Hb_000959_230--Hb_002054_050 Hb_010998_040 Hb_010998_040 Hb_000959_230--Hb_010998_040 Hb_008921_010 Hb_008921_010 Hb_000959_230--Hb_008921_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_001025_120 Hb_001025_120 Hb_002716_060--Hb_001025_120 Hb_018790_020 Hb_018790_020 Hb_002716_060--Hb_018790_020 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_004109_320 Hb_004109_320 Hb_002716_060--Hb_004109_320 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000089_210--Hb_000207_200 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_170416_010 Hb_170416_010 Hb_001761_120--Hb_170416_010 Hb_003531_080 Hb_003531_080 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_012506_030 Hb_012506_030 Hb_002326_040--Hb_012506_030 Hb_002811_270 Hb_002811_270 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0049 17.6273 28.7536 18.8761 17.7311 9.03864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.16215 11.644 14.9122 12.2591 12.2497

CAGE analysis