Hb_043792_040

Information

Type -
Description -
Location Contig43792: 30091-33868
Sequence    

Annotation

kegg
ID crb:CARUB_v10026186mg
description hypothetical protein
nr
ID AFP55598.1
description hypothetical protein, partial [Rosa rugosa]
swissprot
ID -
description -
trembl
ID J7FWT6
description Uncharacterized protein (Fragment) OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42550: 12062-30793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043792_040 0.0 - - hypothetical protein, partial [Rosa rugosa]
2 Hb_000062_540 0.0731578363 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007416_210 0.0801743458 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
4 Hb_001936_130 0.0830090825 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
5 Hb_000409_030 0.0922548333 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
6 Hb_002289_060 0.0939128627 - - conserved hypothetical protein [Ricinus communis]
7 Hb_019181_040 0.0972753297 - - component of oligomeric golgi complex, putative [Ricinus communis]
8 Hb_000352_120 0.099747855 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
9 Hb_091296_010 0.1012179288 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_001916_090 0.1037301077 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
11 Hb_000027_260 0.105626645 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
12 Hb_003529_030 0.1063468114 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
13 Hb_003777_200 0.1075234277 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
14 Hb_000748_030 0.1076150207 - - ATP binding protein, putative [Ricinus communis]
15 Hb_011606_020 0.1085228792 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
16 Hb_007765_040 0.1088549968 - - Cytosolic enolase isoform 3 [Theobroma cacao]
17 Hb_027380_220 0.1093823977 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
18 Hb_170138_010 0.1097243375 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000291_150 0.1097747243 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
20 Hb_000390_050 0.1103559479 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_043792_040 Hb_043792_040 Hb_000062_540 Hb_000062_540 Hb_043792_040--Hb_000062_540 Hb_007416_210 Hb_007416_210 Hb_043792_040--Hb_007416_210 Hb_001936_130 Hb_001936_130 Hb_043792_040--Hb_001936_130 Hb_000409_030 Hb_000409_030 Hb_043792_040--Hb_000409_030 Hb_002289_060 Hb_002289_060 Hb_043792_040--Hb_002289_060 Hb_019181_040 Hb_019181_040 Hb_043792_040--Hb_019181_040 Hb_000062_540--Hb_002289_060 Hb_000062_540--Hb_001936_130 Hb_000352_120 Hb_000352_120 Hb_000062_540--Hb_000352_120 Hb_004129_140 Hb_004129_140 Hb_000062_540--Hb_004129_140 Hb_000062_540--Hb_019181_040 Hb_000390_050 Hb_000390_050 Hb_007416_210--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007416_210--Hb_003097_140 Hb_003994_220 Hb_003994_220 Hb_007416_210--Hb_003994_220 Hb_007765_040 Hb_007765_040 Hb_007416_210--Hb_007765_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_004679_030 Hb_004679_030 Hb_000409_030--Hb_004679_030 Hb_000941_150 Hb_000941_150 Hb_000409_030--Hb_000941_150 Hb_002768_060 Hb_002768_060 Hb_000409_030--Hb_002768_060 Hb_000976_100 Hb_000976_100 Hb_000409_030--Hb_000976_100 Hb_009296_080 Hb_009296_080 Hb_000409_030--Hb_009296_080 Hb_012114_100 Hb_012114_100 Hb_000409_030--Hb_012114_100 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_000046_500 Hb_000046_500 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_019181_040--Hb_000317_040 Hb_004754_050 Hb_004754_050 Hb_019181_040--Hb_004754_050 Hb_000703_190 Hb_000703_190 Hb_019181_040--Hb_000703_190 Hb_001269_330 Hb_001269_330 Hb_019181_040--Hb_001269_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.753016 0.934075 1.1709 2.84716 1.25851 1.04611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915406 0.882817 2.31756 1.26962 2.43495

CAGE analysis