Hb_043903_010

Information

Type -
Description -
Location Contig43903: 110-436
Sequence    

Annotation

kegg
ID bdi:100830970
description protein kinase APK1B, chloroplastic-like
nr
ID XP_010523451.1
description PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
swissprot
ID O49840
description Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=2 SV=1
trembl
ID Q1KMP8
description Serine/threonine kinase-like protein ABC1063 OS=Hordeum vulgare var. distichum PE=2 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043903_010 0.0 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
2 Hb_000375_040 0.0295624703 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
3 Hb_008953_010 0.0494422722 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
4 Hb_000828_030 0.0913502704 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_004981_020 0.1047807574 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
6 Hb_143766_040 0.1049607016 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
7 Hb_007337_010 0.1050798788 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
8 Hb_081224_010 0.1058693121 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
9 Hb_187247_010 0.1067097996 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
10 Hb_003446_030 0.1073055046 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
11 Hb_126040_020 0.1088832716 - - -
12 Hb_061590_010 0.1099129841 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
13 Hb_005726_030 0.1103086562 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
14 Hb_000201_080 0.110353097 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_001604_140 0.1119144027 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
16 Hb_003685_060 0.1129377923 - - PREDICTED: laccase-15 [Jatropha curcas]
17 Hb_000022_270 0.113909596 - - conserved hypothetical protein [Ricinus communis]
18 Hb_106528_020 0.1182119163 - - Cationic peroxidase 2 precursor [Theobroma cacao]
19 Hb_010253_010 0.1217317403 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
20 Hb_001675_210 0.1219583566 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_043903_010 Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_043903_010--Hb_000375_040 Hb_008953_010 Hb_008953_010 Hb_043903_010--Hb_008953_010 Hb_000828_030 Hb_000828_030 Hb_043903_010--Hb_000828_030 Hb_004981_020 Hb_004981_020 Hb_043903_010--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_043903_010--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_043903_010--Hb_007337_010 Hb_000375_040--Hb_008953_010 Hb_000375_040--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_000375_040--Hb_081224_010 Hb_187247_010 Hb_187247_010 Hb_000375_040--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_000375_040--Hb_061590_010 Hb_008953_010--Hb_000828_030 Hb_008953_010--Hb_081224_010 Hb_005726_030 Hb_005726_030 Hb_008953_010--Hb_005726_030 Hb_008953_010--Hb_061590_010 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_005433_050 Hb_005433_050 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_004981_020--Hb_143766_040 Hb_004981_020--Hb_007337_010 Hb_004981_020--Hb_187247_010 Hb_004981_020--Hb_061590_010 Hb_004981_020--Hb_005726_030 Hb_126040_020 Hb_126040_020 Hb_004981_020--Hb_126040_020 Hb_143766_040--Hb_007337_010 Hb_143766_040--Hb_187247_010 Hb_143766_040--Hb_061590_010 Hb_143766_040--Hb_005726_030 Hb_143766_040--Hb_126040_020 Hb_007337_010--Hb_187247_010 Hb_007337_010--Hb_061590_010 Hb_007337_010--Hb_005726_030 Hb_007337_010--Hb_126040_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.773235 0 0 0 0.475969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.6496 0

CAGE analysis