Hb_043935_010

Information

Type -
Description -
Location Contig43935: 3457-6873
Sequence    

Annotation

kegg
ID mtr:MTR_064s0055
description Receptor protein kinase-like protein
nr
ID XP_003636916.1
description Receptor protein kinase-like protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7ZXW6
description Receptor protein kinase-like protein OS=Medicago truncatula GN=MTR_064s0055 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043935_010 0.0 - - Receptor protein kinase-like protein [Medicago truncatula]
2 Hb_015817_010 0.0628315335 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
3 Hb_004392_030 0.0707749534 - - oxidoreductase family protein [Populus trichocarpa]
4 Hb_006147_020 0.072936491 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012539_080 0.0740378664 - - Polyprotein, putative [Solanum demissum]
6 Hb_010381_080 0.0746054627 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002659_050 0.0887486413 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
8 Hb_004459_050 0.0929611086 - - conserved hypothetical protein [Ricinus communis]
9 Hb_080791_010 0.094262936 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_004242_200 0.097346718 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
11 Hb_000907_130 0.1016394614 - - -
12 Hb_002835_050 0.1070770641 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
13 Hb_000026_060 0.1143414463 - - beta-1,3-glucanase [Manihot esculenta]
14 Hb_027654_010 0.1150195321 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
15 Hb_114893_010 0.1165160501 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
16 Hb_001300_240 0.1189411595 - - shikimate dehydrogenase, putative [Ricinus communis]
17 Hb_006133_010 0.1198482691 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_000199_090 0.1355371761 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
19 Hb_005348_050 0.1366093251 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_003171_040 0.1385038903 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_043935_010 Hb_043935_010 Hb_015817_010 Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_004392_030 Hb_004392_030 Hb_043935_010--Hb_004392_030 Hb_006147_020 Hb_006147_020 Hb_043935_010--Hb_006147_020 Hb_012539_080 Hb_012539_080 Hb_043935_010--Hb_012539_080 Hb_010381_080 Hb_010381_080 Hb_043935_010--Hb_010381_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_080791_010 Hb_080791_010 Hb_015817_010--Hb_080791_010 Hb_015817_010--Hb_006147_020 Hb_005029_030 Hb_005029_030 Hb_015817_010--Hb_005029_030 Hb_000026_060 Hb_000026_060 Hb_015817_010--Hb_000026_060 Hb_004459_050 Hb_004459_050 Hb_015817_010--Hb_004459_050 Hb_004392_030--Hb_012539_080 Hb_004392_030--Hb_006147_020 Hb_002835_050 Hb_002835_050 Hb_004392_030--Hb_002835_050 Hb_004392_030--Hb_010381_080 Hb_004392_030--Hb_015817_010 Hb_006147_020--Hb_012539_080 Hb_006147_020--Hb_010381_080 Hb_006147_020--Hb_080791_010 Hb_012539_080--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_012539_080--Hb_000907_130 Hb_113379_010 Hb_113379_010 Hb_012539_080--Hb_113379_010 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_010381_080--Hb_004459_050 Hb_000589_410 Hb_000589_410 Hb_002659_050--Hb_000589_410 Hb_006133_010 Hb_006133_010 Hb_002659_050--Hb_006133_010 Hb_005348_050 Hb_005348_050 Hb_002659_050--Hb_005348_050 Hb_002659_050--Hb_004459_050 Hb_008948_130 Hb_008948_130 Hb_002659_050--Hb_008948_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0743882 0.0374667 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0340432 0.258558

CAGE analysis