Hb_043950_010

Information

Type -
Description -
Location Contig43950: 1880-7154
Sequence    

Annotation

kegg
ID cit:102619199
description uncharacterized LOC102619199
nr
ID XP_006495334.1
description PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067L0G8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26940 PE=4 SV=1
Gene Ontology
ID GO:0005622
description kinase superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42595: 5377-7145 , PASA_asmbl_42596: 6643-7104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043950_010 0.0 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
2 Hb_007545_160 0.0439795025 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
3 Hb_004410_060 0.079727077 - - -
4 Hb_124976_010 0.0998669684 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_019859_030 0.1069322408 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
6 Hb_007139_010 0.1072193304 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
7 Hb_012815_020 0.107946511 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_000833_080 0.1129193745 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
9 Hb_000078_040 0.1218744517 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
10 Hb_000580_040 0.1224160991 - - -
11 Hb_022348_020 0.1411184394 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_000696_320 0.1414912296 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
13 Hb_003581_040 0.1432096062 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
14 Hb_002871_200 0.1442690242 - - -
15 Hb_173423_010 0.1661017863 - - conserved hypothetical protein [Ricinus communis]
16 Hb_078466_020 0.1703645515 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
17 Hb_080147_010 0.2022501757 - - -
18 Hb_006183_010 0.2033748578 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012733_080 0.2041644959 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_011362_030 0.2124721814 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_043950_010 Hb_043950_010 Hb_007545_160 Hb_007545_160 Hb_043950_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_043950_010--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_043950_010--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007545_160--Hb_007139_010 Hb_007545_160--Hb_012815_020 Hb_004410_060--Hb_124976_010 Hb_004410_060--Hb_019859_030 Hb_004410_060--Hb_007139_010 Hb_004410_060--Hb_012815_020 Hb_000078_040 Hb_000078_040 Hb_004410_060--Hb_000078_040 Hb_124976_010--Hb_019859_030 Hb_124976_010--Hb_007139_010 Hb_124976_010--Hb_012815_020 Hb_124976_010--Hb_000078_040 Hb_022348_020 Hb_022348_020 Hb_124976_010--Hb_022348_020 Hb_019859_030--Hb_007139_010 Hb_019859_030--Hb_012815_020 Hb_019859_030--Hb_000078_040 Hb_019859_030--Hb_022348_020 Hb_007139_010--Hb_012815_020 Hb_007139_010--Hb_000078_040 Hb_007139_010--Hb_022348_020 Hb_012815_020--Hb_000078_040 Hb_012815_020--Hb_022348_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0989376 0 0 0 0.303637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis