Hb_044005_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig44005: 13-1449
Sequence    

Annotation

kegg
ID rcu:RCOM_0898870
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073245.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q9LMP6
description Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2
trembl
ID A0A067KLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044005_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_170193_020 0.1319454588 - - -
3 Hb_099496_010 0.2342405647 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
4 Hb_007078_010 0.2342882936 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022958_010 0.2441498677 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
6 Hb_001496_080 0.2510813871 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_063943_010 0.2511218073 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
8 Hb_000022_140 0.252256509 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
9 Hb_001516_050 0.2523381096 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
10 Hb_022213_030 0.2533606304 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
11 Hb_085083_020 0.2535210657 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
12 Hb_003781_010 0.2570975239 - - PREDICTED: histone H2AX [Eucalyptus grandis]
13 Hb_183443_010 0.2579778719 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
14 Hb_012092_080 0.2627362981 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
15 Hb_003175_110 0.2634826261 - - -
16 Hb_001341_020 0.2669077209 - - Uncharacterised protein [Bordetella pertussis]
17 Hb_089206_010 0.2687804075 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
18 Hb_003124_030 0.2699664058 - - At4g33625-like protein [Brassica napus]
19 Hb_154141_010 0.2704555359 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_011639_040 0.2767689603 - - hypothetical protein M569_08265, partial [Genlisea aurea]

Gene co-expression network

sample Hb_044005_010 Hb_044005_010 Hb_170193_020 Hb_170193_020 Hb_044005_010--Hb_170193_020 Hb_099496_010 Hb_099496_010 Hb_044005_010--Hb_099496_010 Hb_007078_010 Hb_007078_010 Hb_044005_010--Hb_007078_010 Hb_022958_010 Hb_022958_010 Hb_044005_010--Hb_022958_010 Hb_001496_080 Hb_001496_080 Hb_044005_010--Hb_001496_080 Hb_063943_010 Hb_063943_010 Hb_044005_010--Hb_063943_010 Hb_170193_020--Hb_099496_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_002780_060 Hb_002780_060 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030 Hb_099496_010--Hb_002780_060 Hb_098315_090 Hb_098315_090 Hb_099496_010--Hb_098315_090 Hb_011639_040 Hb_011639_040 Hb_099496_010--Hb_011639_040 Hb_000022_170 Hb_000022_170 Hb_099496_010--Hb_000022_170 Hb_000575_070 Hb_000575_070 Hb_007078_010--Hb_000575_070 Hb_005539_230 Hb_005539_230 Hb_007078_010--Hb_005539_230 Hb_007078_010--Hb_170193_020 Hb_001085_210 Hb_001085_210 Hb_007078_010--Hb_001085_210 Hb_009848_050 Hb_009848_050 Hb_007078_010--Hb_009848_050 Hb_154141_010 Hb_154141_010 Hb_022958_010--Hb_154141_010 Hb_090530_010 Hb_090530_010 Hb_022958_010--Hb_090530_010 Hb_006274_050 Hb_006274_050 Hb_022958_010--Hb_006274_050 Hb_006905_030 Hb_006905_030 Hb_022958_010--Hb_006905_030 Hb_001341_020 Hb_001341_020 Hb_022958_010--Hb_001341_020 Hb_032876_030 Hb_032876_030 Hb_022958_010--Hb_032876_030 Hb_015978_050 Hb_015978_050 Hb_001496_080--Hb_015978_050 Hb_001496_080--Hb_154141_010 Hb_002047_020 Hb_002047_020 Hb_001496_080--Hb_002047_020 Hb_085083_020 Hb_085083_020 Hb_001496_080--Hb_085083_020 Hb_001496_080--Hb_022958_010 Hb_000236_450 Hb_000236_450 Hb_001496_080--Hb_000236_450 Hb_146339_010 Hb_146339_010 Hb_063943_010--Hb_146339_010 Hb_003059_010 Hb_003059_010 Hb_063943_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_063943_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_063943_010--Hb_003175_110 Hb_183443_010 Hb_183443_010 Hb_063943_010--Hb_183443_010 Hb_003124_030 Hb_003124_030 Hb_063943_010--Hb_003124_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.849411 0.21851 0.194723 0.33867 0.0891322 0.321097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.473358 1.30471 1.46349

CAGE analysis